IPad does not sync correctly with iTunes

Hey, I have a problem and would appreciate some help.
I have all my music library on itunes on my macbook (including some albums that I have created as compilations by collating multiple albums and for which I have edited the album cover photo ie selected a photo of my own). Some of the songs have been entered in my library by cds that I had and the rest by being purchased directly from itunes.
When I sync my itunes library with my ipods all is well and the albums, artists, playlists etc sync exactly the same (that is covers, tracks, order etc remain as shown on my library).
When I sync with my iphone 5S or my ipad air then I get strange... Some albums show correclty, others have a different cover photo - not the one that I have selected and edited on itunes -  some have the tracks doubled or even the entire albums doubled, etc...
Although I have tried to solve this on my own, i have not managed yet...
BTW both my devices (iphone and ipad) sync automatically with icloud and so I only connect them to my macbook in order to sync the music. Maybe this is the problem?? Is there any way to have icloud NOT sync music with the devices?
On my macbook I have tried the ioption 'manage music manually' and then selecting the albums on my own but i get the same strange results.
Any ideas?
I even tried to erase all the music from my ipad/iphone (by selecting 'manage music manually' and then not selecting any of the albums or tracks in my library) but the music, at least part of it remains there... basically only the songs or albums purchased from itunes showing the icloud download icon next to them.
Any sugestions on how to solve this issue?
THX for your help,
Dimitris

Scrap that, it seems to have self remedied
-Tom

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