IPad not recognized

I have an iMac dual core and bought a new iMac Core i3. When I set up the new iMac, I restored my files from a Time Machine backup. Mistake, I now had two machines with the same iTunes files and my iPad and iPhone were no longer recognized by either. I deleted the iTunes files on one computer. I reloaded iTunes on both. I reset the iPhone and the iPad. I was able to synch both with the new computer. I restarted both computers and I could still synch with the new computer. I shutdown and 24 hours later the new computer (and the old computer) would not recognize the iPad or the iPhone. I reinstalled iTunes and everything worked again. I shutdown and restarted, everything worked. Now, 24 hours later, the new computer will not recognized the iPad or the iPhone once again. Any ideas or experience?

De-authorizing failed on both computers. Being authorized or not doesn't seem to explain why neither computer would recognize the presence of the iPad or the iPhone after 24 hours but would do so immediately after iTunes was reinstalled. I think there is a difference between not syncing and not recognizing that the devise is attached.
That said, what seems to have worked:
I deleted everything associated with iTunes on the older computer and reinstalled it with no data files. I reinstalled iTunes on the new computer which allowed me to attach the iPad and load the OS update. Following that I loaded the OS .4 update on the new computer. Following that, I reinstalled iTunes on the new computer and shared its files with the old computer. Both are still authorized as 2 of my five allowed computers. So far, that seems to be working.

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