IPhone 3g Apps not updating in iTunes and Appstore on iPhone?

Ok, I usually check for updates for application using iTunes and I have updated some applications with it, however, I have noticed that there are some apps that has updates but won't be detected by iTunes. I would manually check the version I have in iTunes versus the store and when I download and do a sync, it updates it. So now my question is, uhh..what is happening?
I obviously can't rely on the auto update within iTunes and the App Store on the iPhone doesn't detect it as well..
Can someone shed some light with this?

Thanks good to know. As long as it's a known issue. I guess I just have to deal with it. I know that I have seen on blogs for new application updates and I would be like ok good. But it would never ever show up in my iTune or appstore on the iPhone. So I guess I just have to keep that in mind and download manually.
Thanks again!

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