IPhone 5 previously would not sync properly, now I updated to iTunes 11.1.3 and it won't show at all!

I've been having trouble getting my phone to sync. It's been a real pain... Previously, I deleted all the music off the phone and re-synced my library. I recently added some new music, and I was getting the same issue, so I tried my old trick, and it wouldn't remove the music properly. I reset the phone and the music remained (at least, it showed, but skipping through the songs, none of them played... so theoretically it removed the actual MUSIC while the song listings stayed in my 'music' app).
Poking around, I found suggestions that maybe updating to the new iTunes would fix the problem. I updated... and now, suddenly, my iPhone won't show up in iTunes at all! It was just connecting BEFORE the update, so it's definitely not the cable. I'm really not sure what to do now.
Currently restarting my computer to be sure that isn't part of the issue. Will report back, but can anyone help me in the meantime?
Edit:
Restarting the computer solved the problem of the device not showing in iTunes, but when it synced, the music was STILL messed up. Trying the remove and re-sync again.

Removed. Re-synced. Still not working. Factory reset the phone, re-installed music... made a GIANT "Other" file instead of actually adding any songs.
Factory resetting again. Any other solutions?
EDIT: If It helps, I'm doing this all over USB connection, not trying to sync music through wifi or anything.

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