IPhone synced with another library..."Erase and Sync" question

I helped someone transfer from an older iPhone to an iPhone 6 and did an encrypted backup on my laptop and then restored that backup to their new phone.
When they took the phone home and tried to sync their library with it they got the following message:
"The iPhone ... is synced with another iTunes library on ...  Do you want to erase this iPhone and sync with this iTunes library?"
I understand what iTunes is referring to but what does "Erase and Sync" actually do?  Does it just erase any media i.e., songs, apps and videos and then resyncs them from the new library or does it completely wipe the phone and start from scratch?
Thanks...

When you say erased, you mean almost like a restore is done to factory settings instead of just the media being erased?
I ask because the older phone is no longer available and they want to preserve their photos, etc.
Can I backup the phone on their computer, select erase and sync and then restore from that backup?

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