Iphone synced with different version - purchases will be erased?

I have had problems with itunes which resulted in having to relocate the program to a different directory on the same PC (vista).
Now when I plug in my iphone it says it is synced with another version of itunes and therefore if I sync music (for example) everything will be erased from the iphone.
Does this mean I will lose purchases of songs made directly to the iphone before syncing (and also purchased apps)?
If so, does anyone know how to avoid losing everything...?

Use the Transfer Purchases command in iTunes prior to syncing.
(54542)

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