IPhone won't show up in iTunes after downloading new software

So I downloaded some secure server-type crap so I can work from home (Healthcare industry) and every since then I can't use my iTunes, it won't recognize my phone. I need the software to work, obviously, but I need my iTunes to work. Can the two coexist? I tried deleting then reloading itunes... nothing. I restarted phone... same. I went and restarted the iphone stuff as the tips say... nothing.
Any ideas?

I'm not that familiar with Windows, but can you create another User account and run your Nexus Service software from there?
Dave M.
MacOSG Founder/Ambassador  An Apple User Group  iTunes: MacOSG Podcast
Creator of 'Mac611 - Mobile Mac Support' (designed exclusively for an iPhone/iPod touch)

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