IPhoto 9.4.1 and Aperture upgrade results in spinning gear that does not stop.

After installing the most recent bundled upgrade for iPhoto and Aperture and responding "continue" to the question I have a spinning gear which has been spinning for more than ten (yes ten) hours. 
I have successfully closed both programs but wonder how to proceeed.  I am running Mountain Lion including the most recent update last week.  My photo library is on an external hard drive due to its size.  My guess is because because I have updated both iPhoto and Aperture the "necessary retagging" that results in the spining gear (not pin wheel) is extensive.  Am I correct that Aperture and iPhot share a common photo library of photos?
Any suggestions - work arounds - to resolve this issue would be greatly apprecated.

No, Aperture and iPhoto do not share a common library unless you tell them to.
iPhoto:
Option 1
Back Up and try rebuild the library: hold down the command and option (or alt) keys while launching iPhoto. Use the resulting dialogue to rebuild. Choose to Repair Database. If that doesn't help, then try again, this time using Rebuild Database.
If that fails:
Option 2
Download iPhoto Library Manager and use its rebuild function. (In Library Manager it's the FIle -> Rebuild command)
This will create an entirely new library. It will then copy (or try to) your photos and all the associated metadata and versions to this new Library, and arrange it as close as it can to what you had in the damaged Library. It does this based on information it finds in the iPhoto sharing mechanism - but that means that things not shared won't be there, so no slideshows, books or calendars, for instance - but it should get all your events, albums and keywords, faces and places back.
Because this process creates an entirely new library and leaves your old one untouched, it is non-destructive, and if you're not happy with the results you can simply return to your old one. 
Regards
TD 

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