IPhoto / Library won't open after MAC Refresh

I recently did a fresh install of my MAC, where I formatted the hard drive and reinstalled MAC OS X Lion. I had all my important files / folders backed up to my Time Machine and I proceeded to copy these back to my machine following the install.
I reinstalled iLife 09, ran the required updates and pointed iPhoto to open my copy of the Library file. I could see all the Events and Pics and then it proceeded to ask me about GPS and downloading pics from my digital camera. When I tried to click on Yes or No it just gave me the circling rainbow.
I looked at a few posts and tried various things they were suggesting in deleting and reinstalling iPhoto and it's files (com.apple.iphoto.pklist) and the pkg files. But that didn't seem to do anything. I tried copying the Preferences file and deleting it's contents, but that didn't do anything.
If someone could help that would be appreciated. It was working fine before I did the refresh.

When I first installed OSX Lion I tried restore the files during setup, but it couldn't seem to find the backup from the old installation on this Mac. I have 2 backups going on capsule 1. iMAC 2. Mac Mini. It could only see the mini.
So when I finished the installation I used finder and naviagted to the capsule and saw the backup there and just copied the folder over from the "latest" folder.
I decided that I wanted to try and get this right, so I started over again and have a fresh installation of OSX Lion with no data. I still couldn't see the back up, but can again using finder. However when I first click on the backup a window appears and says
"Mac OS X can't repair the disk "Time Machine Backups". you can still open or copy files on the disk, but you can't save changes to the files on the disk. Back up the disk and reformat it as soon as you can."
Again I can still see the files and backups, but can't use Migration Assistant, or upon fresh installation.
Any suggestions?

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