Ipod not responding with external hard drive

I have a 30 gb ipod and I have a external hard drive that holds all of my music. When the external hard drive is NOT plugged in everything works fine. However, when I plug in the external hard drive the problem starts. When I connect my ipod the please do not disconnect screen comes up and flashes. Yet, there is no spinning wheel in the top left corner, it causes itunes to freeze for a long period of time, and my ipod is not recognized by itunes or windows.

See this -> http://support.apple.com/kb/TS1493

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    ACL found but not expected on "System/Library/User Template/English.lproj/Library/Application Support".
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    ACL found but not expected on "System/Library/User Template/English.lproj/Library/Audio/Sounds/Banks".
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    Warning: SUID file "System/Library/PrivateFrameworks/DiskManagement.framework/Versions/A/Resources /DiskManagementTool" has been modified and will not be repaired.
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    Warning: SUID file "bin/rcp" has been modified and will not be repaired.
    Permissions differ on "Library/Application Support/Apple/ParentalControls/ContentFiltering", should be drwxrwxr-x , they are drwxr-xr-x .
    Permissions differ on "Library/Application Support/Apple/ParentalControls", should be drwxrwxr-x , they are drwxr-xr-x .
    Permissions differ on "System/Library/PrivateFrameworks/iLifeMediaBrowser.framework/Versions/A/CodeRe sources", should be -rw-r--r-- , they are lrwxr-xr-x .
    Permissions differ on "System/Library/PrivateFrameworks/iPhotoAccess.framework/Versions/A/CodeResourc es", should be -rw-r--r-- , they are lrwxr-xr-x .
    Permissions differ on "System/Library/PrivateFrameworks/iPhotoAccess.framework/Versions/A/Resources/P lugins/BlackAndWhiteEffect.IAPlugin/Contents/CodeResources", should be -rw-r--r-- , they are lrwxr-xr-x .
    Permissions differ on "System/Library/PrivateFrameworks/iPhotoAccess.framework/Versions/A/Resources/P lugins/CubeTransition.IAPlugin/Contents/CodeResources", should be -rw-r--r-- , they are lrwxr-xr-x .
    Permissions differ on "System/Library/PrivateFrameworks/iPhotoAccess.framework/Versions/A/Resources/P lugins/DissolveTransition.IAPlugin/Contents/CodeResources", should be -rw-r--r-- , they are lrwxr-xr-x .
    Permissions differ on "System/Library/PrivateFrameworks/iPhotoAccess.framework/Versions/A/Resources/P lugins/DropletTransition.IAPlugin/Contents/CodeResources", should be -rw-r--r-- , they are lrwxr-xr-x .
    Permissions differ on "System/Library/PrivateFrameworks/iPhotoAccess.framework/Versions/A/Resources/P lugins/FadeThroughBlackTransition.IAPlugin/Contents/CodeResources", should be -rw-r--r-- , they are lrwxr-xr-x .
    Permissions differ on "System/Library/PrivateFrameworks/iPhotoAccess.framework/Versions/A/Resources/P lugins/FlipTransition.IAPlugin/Contents/CodeResources", should be -rw-r--r-- , they are lrwxr-xr-x .
    Permissions differ on "System/Library/PrivateFrameworks/iPhotoAccess.framework/Versions/A/Resources/P lugins/MosaicFlipTransition.IAPlugin/Contents/CodeResources", should be -rw-r--r-- , they are lrwxr-xr-x .
    Permissions differ on "System/Library/PrivateFrameworks/iPhotoAccess.framework/Versions/A/Resources/P lugins/MosaicFlipTransitionSmall.IAPlugin/Contents/CodeResources", should be -rw-r--r-- , they are lrwxr-xr-x .
    Permissions differ on "System/Library/PrivateFrameworks/iPhotoAccess.framework/Versions/A/Resources/P lugins/PageFlipTransition.IAPlugin/Contents/CodeResources", should be -rw-r--r-- , they are lrwxr-xr-x .
    Permissions differ on "System/Library/PrivateFrameworks/iPhotoAccess.framework/Versions/A/Resources/P lugins/PushTransition.IAPlugin/Contents/CodeResources", should be -rw-r--r-- , they are lrwxr-xr-x .
    Permissions differ on "System/Library/PrivateFrameworks/iPhotoAccess.framework/Versions/A/Resources/P lugins/RevealTransition.IAPlugin/Contents/CodeResources", should be -rw-r--r-- , they are lrwxr-xr-x .
    Permissions differ on "System/Library/PrivateFrameworks/iPhotoAccess.framework/Versions/A/Resources/P lugins/SepiaEffect.IAPlugin/Contents/CodeResources", should be -rw-r--r-- , they are lrwxr-xr-x .
    Permissions differ on "System/Library/PrivateFrameworks/iPhotoAccess.framework/Versions/A/Resources/P lugins/TwirlTransition.IAPlugin/Contents/CodeResources", should be -rw-r--r-- , they are lrwxr-xr-x .
    Permissions differ on "System/Library/PrivateFrameworks/iPhotoAccess.framework/Versions/A/Resources/P lugins/WipeTransition.IAPlugin/Contents/CodeResources", should be -rw-r--r-- , they are lrwxr-xr-x .
    Warning: SUID file "usr/bin/quota" has been modified and will not be repaired.
    Warning: SUID file "usr/bin/rlogin" has been modified and will not be repaired.
    Warning: SUID file "usr/bin/rsh" has been modified and will not be repaired.
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    ACL found but not expected on "System/Library/User Template/English.lproj/Sites".
    Permissions differ on "System/Library/CoreServices/Front Row.app/Contents/CodeResources", should be -rw-r--r-- , they are lrw-r--r-- .
    Permissions differ on "System/Library/CoreServices/Front Row.app/Contents/PlugIns/DVD.frappliance/Contents/CodeResources", should be -rw-r--r-- , they are lrw-r--r-- .
    Permissions differ on "System/Library/CoreServices/Front Row.app/Contents/PlugIns/FRSettings.frappliance/Contents/CodeResources", should be -rw-r--r-- , they are lrw-r--r-- .
    Permissions differ on "System/Library/CoreServices/Front Row.app/Contents/PlugIns/FRSources.frappliance/Contents/CodeResources", should be -rw-r--r-- , they are lrw-r--r-- .
    Permissions differ on "System/Library/CoreServices/Front Row.app/Contents/PlugIns/Movies.frappliance/Contents/CodeResources", should be -rw-r--r-- , they are lrw-r--r-- .
    Permissions differ on "System/Library/CoreServices/Front Row.app/Contents/PlugIns/Music.frappliance/Contents/CodeResources", should be -rw-r--r-- , they are lrw-r--r-- .
    Permissions differ on "System/Library/CoreServices/Front Row.app/Contents/PlugIns/Photos.frappliance/Contents/CodeResources", should be -rw-r--r-- , they are lrw-r--r-- .
    Permissions differ on "System/Library/CoreServices/Front Row.app/Contents/PlugIns/Podcasts.frappliance/Contents/CodeResources", should be -rw-r--r-- , they are lrw-r--r-- .
    Permissions differ on "System/Library/CoreServices/Front Row.app/Contents/PlugIns/TV.frappliance/Contents/CodeResources", should be -rw-r--r-- , they are lrw-r--r-- .
    Permissions differ on "System/Library/PrivateFrameworks/BackRow.framework/Versions/A/CodeResources", should be -rw-r--r-- , they are lrw-r--r-- .
    ACL found but not expected on "System/Library/User Template/English.lproj/Desktop".
    ACL found but not expected on "System/Library/User Template/English.lproj/Library/Application Support".
    ACL found but not expected on "System/Library/User Template/English.lproj/Library/Assistants".
    ACL found but not expected on "System/Library/User Template/English.lproj/Library/Audio/MIDI Drivers".
    ACL found but not expected on "System/Library/User Template/English.lproj/Library/Audio/Plug-Ins/Components".
    ACL found but not expected on "System/Library/User Template/English.lproj/Library/Audio/Plug-Ins/Digidesign".
    ACL found but not expected on "System/Library/User Template/English.lproj/Library/Audio/Plug-Ins/VST".
    ACL found but not expected on "System/Library/User Template/English.lproj/Library/Audio/Plug-Ins".
    ACL found but not expected on "System/Library/User Template/English.lproj/Library/Audio/Sounds/Alerts".
    ACL found but not expected on "System/Library/User Template/English.lproj/Library/Audio/Sounds/Banks".
    ACL found but not expected on "System/Library/User Template/English.lproj/Library/Audio/Sounds".
    ACL found but not expected on "System/Library/User Template/English.lproj/Library/Audio".
    ACL found but not expected on "System/Library/User Template/English.lproj/Library/ColorPickers".
    ACL found but not expected on "System/Library/User Template/English.lproj/Library/Compositions".
    ACL found but not expected on "System/Library/User Template/English.lproj/Library/Favorites".
    ACL found but not expected on "System/Library/User Template/English.lproj/Library/FontCollections".
    ACL found but not expected on "System/Library/User Template/English.lproj/Library/Fonts".
    ACL found but not expected on "System/Library/User Template/English.lproj/Library/iMovie/Plug-ins".
    ACL found but not expected on "System/Library/User Template/English.lproj/Library/iMovie/Sound Effects".
    ACL found but not expected on "System/Library/User Template/English.lproj/Library/iMovie".
    ACL found but not expected on "System/Library/User Template/English.lproj/Library/Input Methods".
    ACL found but not expected on "System/Library/User Template/English.lproj/Library/Internet Plug-Ins".
    ACL found but not expected on "System/Library/User Template/English.lproj/Library/Keyboard Layouts".
    ACL found but not expected on "System/Library/User Template/English.lproj/Library/Preferences".
    ACL found but not expected on "System/Library/User Template/English.lproj/Library/Printers".
    ACL found but not expected on "System/Library/User Template/English.lproj/Library/Screen Savers".
    ACL found but not expected on "System/Library/User Template/English.lproj/Library/Sounds".
    ACL found but not expected on "System/Library/User Template/English.lproj/Library/Voices".
    ACL found but not expected on "System/Library/User Template/English.lproj/Library".
    ACL found but not expected on "System/Library/User Template/English.lproj/Movies".
    ACL found but not expected on "System/Library/User Template/English.lproj/Music".
    ACL found but not expected on "System/Library/User Template/English.lproj/Pictures".
    ACL found but not expected on "System/Library/User Template/English.lproj/Public".
    Permissions differ on "Applications/iTunes.app/Contents/CodeResources", should be -rw-rw-r-- , they are lrw-rw-r-- .
    Permissions differ on "Applications/iTunes.app/Contents/Frameworks/InternetUtilities.bundle/Contents/ CodeResources", should be -rw-rw-r-- , they are lrw-rw-r-- .
    Permissions differ on "Applications/iTunes.app/Contents/Resources/iTunesHelper.app/Contents/CodeResou rces", should be -rw-rw-r-- , they are lrw-rw-r-- .
    Warning: SUID file "System/Library/Filesystems/AppleShare/afpLoad" has been modified and will not be repaired.
    Warning: SUID file "System/Library/PrivateFrameworks/DiskManagement.framework/Versions/A/Resources /DiskManagementTool" has been modified and will not be repaired.
    Warning: SUID file "sbin/umount" has been modified and will not be repaired.
    Warning: SUID file "bin/rcp" has been modified and will not be repaired.
    Permissions differ on "Library/Application Support/Apple/ParentalControls/ContentFiltering", should be drwxrwxr-x , they are drwxr-xr-x .
    Permissions differ on "Library/Application Support/Apple/ParentalControls", should be drwxrwxr-x , they are drwxr-xr-x .
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