Is it possible to have emtpy space in program that can "click through"?

I am writing a java program that would need me have a table look that I can click through the space in the square within the table, so I can click on the stuff on Windows desktop. Is it even possible with Java?
Thanks a lot!

This is part of my school project.
I am working a program that is a table, and detect the color on the windows desktop area under each "hole", once the color change, the program would do something to show this "hole" has something change. I need to able to click in the "hole" as well, directly click the Windows area right under the Java. That's why I need to do "true" transparent for the "hole" area in the table.
Really hope someone knows how to do it.

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