Is the mac mini server the same hardware as the other mac minis (except for the quad core i7 and dual hard drives) with different software or is it configured differently?

I have a mac mini with an i7 dual core processor. It is perceptably slower than my macbook pro with a quad core i7. Does the mac mini server have the same hardware configuation as the regular mac mini with server software or is the hardware different (aside from the i7 quad core and dual hard drives)? I want a mini with a quad core i7...

Your assumption is correct.  The server does however only
have the Intel HD3000 graphics like the base model with
no option, at this time, for the discrete graphics chip.  So,
depending on what you are using it for, that could be a deal
breaker.  Remember that your MBP does have a discrete
graphics chip.
I have a 2011 Mini Server connected to a Thunderbolt display
that gets used as an engineering workstation and general
personal use (some photo editing, LP restoraton, general
internet browsing).  You simply just not enable any of the
server services.  I find the combination to work quite well
for my purposes.  I also have a 13" 2.7 GHz i7 Macbook Pro
which is pretty much strictly for work.  As far as CPU
power it is pretty much equivelent to your Mini.  For the most
part I find the Mini does outperfom my MBP.  I heavily use
Parallels and Windows7 virtual machines, so the more cores
the better.
So, If you do a lot of CPU intensive stuff that is multithreaded,
the Server may help.  If it is graphics intensive and your software
heavily leaverages the GPU, you may actually take a hit on
performance.

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