Is there a "replace files" bug in iTunes?  Plays fine in iTunes- not on Pod

Hello, all. Long story short, I'm re-ripping all my CDs at a higher bit rate. I'm going from 128 Kbps AAC to 192 Kbps AAC (variable bit rate.) Now I'm having issues.
So far, when iTunes asks me if I want to replace my existing files before I rip, I say "yes," but now I'm wondering if that's a big mistake due to a bug in iTunes. Why? Well, although the newly ripped album plays fine in iTunes and through my iPod (using it as a hard drive through the computer), once I disconnect my iPod and make it portable, the iPod will skip track #2 (for example) of a 9 track cd.
I've reset my iPod - no change.
I've deleted the album from my iPod and dragged it back on there - no change.
I'm trying to track down the root of the problem. The replacement file is obviously fine, and even plays in another media player. Someone said "replacing" files is bad because iTunes doesn't replace gapless playback information, and it uses old data for your newly sized files. Is that the root of my problem? Does iTunes have a "replace existing files" bug? It's the only thing I can think of. A solution would be to have iTunes re-analyze all my iTunes tracks for gapless playback and other data, but that doesn't seem to be an iTunes option. Any ideas? Re-ripping the cd is not an option. (But for all you whistle blowers, rest assured it was a cd I bought, so everything is legal.)
5th gen iPod with video   Windows XP   iTunes 7.1.1.5

Have you updated your iPod and iTunes sofware?
most cases, iTunes can play these high quality songs, which is meant for newer mobile devices like  iPhones, iPod Touch, nano and iPad, which the older iPod cant play, but only playable with iPod classic sofware version 2.0.4
most likely it is an incompatible song format, read this Apple support article.
http://support.apple.com/kb/HT1334?viewlocale=en_USet
If  your iPod software is version 1.1.2, then you have to use lower quality format.
Can you select the problematic song, and Advance -> create iPod version

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