Is there a way to copy all my PDfs in ibooks on my iPad?

Because I'm still sorting out an issue with ibooks on the iMac renaming files so they do not match the names on my iPad, I am wondering if there is a way to copy all the pdfs I have in ibooks on my ipad (without doing each one, one at a time) so I can save a copy in Evernote or dropbox so when I sync and update shortly, I don't loose what I have?
Thanks for any help you can offer.
Michelle

Thank you.Ok say for e.g.
500 video files imported in fcpx
800 clips extracted from these obviously on the timeline and joined/compounded according to their content in say 15 layers according to 15 instruments used ,so now just to see the entire usable footage ....
now one 7 minute song sequence has to be made where bits would be simultaneously taken from these 15 layers as all instruments are playing simultaneously
these shots are not more than 2 secs each according to the beat........
when I try to work with these 15 layers as well as the Final primary layer that I'm making in the same timeline my fcpx becomes slow
but when I drag individual layer to individual timelines it is fine so that is the only option
but now for every 2 second bit I have to go back to the 15 layered timeline and find one single suitable shot
So I was wondering is there a way to be able to see these layers and clips on the timeline in the browser in a systematic fashion like the way we get with keywords  ?
and keywords can only be used in the imported clips already in the browser ,and not after we drag it on the timeline.....
Till now I think exporting and importing back is the only option ...but is there another work around ?

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