Issue with late coming hrs deduction

Hello,
We have positive time management in place for plant workmen and one absence configured called Late coming to duty.
for which deduction take place in case person reports late in duty.
Now issue is, if workers are doing off-day duty on sunday or wrongly punched on sunday at some late hrs, then at the month end whole day's salary is getting deducted instead of only for late coming hrs. By default in IT2001 "Full Day" indicator is getting selected, therefore we cannot specify the hrs of late coming.
Please sugest how to rectify it, how to deselect the "Full Day" indicator in IT2001 and configure the required late coming hrs.
Do i need to do any modification in counting rule of that absence??
Regards
Tan

Thanks Ranjeeta...it was helpful
Can you please help in another issue i am facing related to it, which is related to fixed sunday off. We do have work-schedule defined sunday as off-day for all employees. But still system is not checking it and deducting salary in case there is no punching on Sunday. For resolving it, we are uploading a off-day special daily work-schedule for all employees in IT2003 and also maintaining variable offs there in case employee works on Sunday.
Now, problem is when employee's off is already defined on sunday in IT2003 and  by mistake he punches on Sunday, system is not reading that and allowing his attendance to be recorded.
Please advise, how to rectify this issue.
Regards
Tan

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      Reset PRAM.   http://support.apple.com/kb/PH18761
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