Issues With Reconnecting Library to Referenced Files

I'm hoping somebody may be able to shed some light on very strange behavior I'm currently experiencing with Aperture. Before I continue let me say ahead of time that I've already run a Repair Permissions, Repair Database and a complete Rebuild Database on the Library. That said here is what's happening.
My workflow consists of Importing all images via Aperture, as referenced files, on to a  small, external hard drive. When I return to my studio I manually copy the folder of images, from the small external drive, over to my desktop hard drive. The next step is to Import the Field Library to my desktop MAIN library. Once the Field Library is Imported into the MAIN Desktop library I then highlight all the images and select File>Locate Referenced Files. Though I've done this hundreds of times in the past, it's currently not working on some files. Here's where the very strange behavior comes in.
When the Locae Referenced Files window comes up I see the image in the top pane that I want to reconnect. In the bottom pain I navigate to the drive the image now lives on, I find it and it too appears in the bottom window. So far all seems to be fine, except when I tried reconnecting, Aperture went through the process but didn't actually reconnect. I retried several times but after the first try to reconnect the Reconnect & Reconnect All buttons is grayed out.
Ok, so what the heck is going on? I start reviewing the Metadata of each image while still in the Locate Referenced Files window. The file numbers are exactly the same but the time stamp on each image is different. Why I have no idea. I plug in the original mini field drive with all the images that Aperture Imported to check the Metadata on the field drive. Sure enough it's identical to the Metadata on the Desktop drive which means it's different from the Aperture Library on the orignal drive Apertue saved it to as well. But what's even more interesting is that the minute the mini hard drive is plugged in, Aperture sees it and reconnects the images automatically, even though the potential issue of the metadata timestamp being different is the same on both the mini field drive and my desktop drive.
In summary, when Aperture wouldn't connect the images that were on the desktop drive I thought I found the reason; a discrepancy in Metadata. But when the original drive was plugged in, the same files had the same discrepancies yet Aperture found them fine.
None of this would be a probelm if Aperture had the ability to FORCE RECONNECT. The images are exactly the same except for some minor metadata descrepencies that I have no idea how they got changed and I really don't care about. But............. how the heck am I going to get these fiels reconnected without a Force REconnect option. Any ideas out there?

William is right - use the provided tools.
. Never once could it not find the images once I took it and showed the exact path to where  the images were newly located. So what happens if that drive ever fails completely and I have to replace it with a totally new backup?
There must be something wrong with your external drive, if reconnect is not working. I had never, ever trouble to reconnect the originals after copying or cloning a drive, when I restored a mac from my backup.
Check the filesystem on your field drive, if the file system is MacOS Extended (Journaled).

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    Path:            /Applications/Aperture.app/Contents/MacOS/Aperture
    Identifier:      com.apple.Aperture
    Version:         3.4.1 (3.4.1)
    Build Info:      Aperture-301039000000000~2
    App Item ID:     408981426
    App External ID: 11130653
    Code Type:       X86-64 (Native)
    Parent Process:  launchd [177]
    User ID:         501
    Date/Time:       2012-10-25 08:47:06.464 +1300
    OS Version:      Mac OS X 10.8.2 (12C60)
    Report Version:  10
    Interval Since Last Report:          122141 sec
    Crashes Since Last Report:           9
    Per-App Interval Since Last Report:  102826 sec
    Per-App Crashes Since Last Report:   8
    Anonymous UUID:                      C8AB497A-18DB-3A43-8663-4B28960DFA6E
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    Exception Type:  EXC_BAD_ACCESS (SIGSEGV)
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    objc_msgSend() selector name: dealloc
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    1   com.apple.Aperture                      0x0000000106f2ce46 0x106e03000 + 1220166
    2   com.apple.Aperture                      0x0000000106f2cf32 0x106e03000 + 1220402
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    Identifier:      com.apple.Aperture
    Version:         3.4.1 (3.4.1)
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    Interval Since Last Report:          122141 sec
    Crashes Since Last Report:           9
    Per-App Interval Since Last Report:  102826 sec
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    Mandy
    We
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    Thanks for helping make community forums a great place.
    Hi,
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