Issues with timecode remapping when transcoding from 24fps to 23.976fps

I'm trying to transcode a RedCode reference QuickTime at 24FPS into a DVCProHD QuickTime at 23.976FPS. I've enabled "Frame Controls" and "Set duration to: so source frames play at 23.98 fps", and I get a one to one mapping of frames from the original R3D reference QuickTime to the DVCProHD QuickTime, which is what I want. The problem is that compressor is applying a 1000/1001 conversion to the start timecode for the original QuickTime: for instance, if the start timecode of my 24fps clip is 01:26:10:14, the start timecode of my transcoded clip becomes 01:26:05:10, which corresponds to applying a 1000/1001 conversion to the timecode. That's definitely not what you want, as it makes it very difficult to go back to the original media based if you edit in Final Cut Pro with the new media.
So the question is: is there a magic setting which tells Compressor not to mess with the start timecode of a clip and just copy it from the source to the destination?
On a related note: RedCode reference QuickTimes appear to have two timecode tracks: the first one seems to be "run" timecode (increments as long as the camera is capturing), the second one is "time of day" timecode (or I'm guessing that it can be synced to an external timecode source). Compressor seems to pick the first timecode track as the one it copies to the destination QuickTime: is there a way to tell it which timecode track it should read from?

Any luck altering the layout of the Timecode tracks in QT Pro? Having never done this myself for a RED-sourced file, that would mean either setting one above the other other via the layer number (the small box under Visual Settings) and/or toggling tracks On/Off.
Also, to go in a different direction, any luck with Cinema Tools' Conform feature? You should be able to open up your 24fps QT clip and conform it to 23.98fps. Or do you still get the 1000/1001 remap there?

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