Itunes 10.2.2 not importing all files within a directory

Hello all, here is my very frustrating issue.
I am running Itunes 10.2.2.14 on a x64bit Windows 7 machine and i am having an issue importing my full library from an external USB harddrive. Originally all the music on this external drive was at one point in time completely imported and functioning in iTunes. The short version of this long story is that I moved my main personal server from windows 7 to ubuntu, after installing VM player and attaching a external HD with my music iTunes will only import 7% of my music!! I have doubled checked permissions and this is not an issue. This is also not a format issue as the mass majority of my music is .mp3.
I have cleared the music library several times, and even used another PC to import the folder and have found that iTunes appears to be importing the exact same 7% of my music library. The only article i have found that is even close to providing a explaination is page 4 on this discussion here:
https://discussions.apple.com/thread/2566265?start=45&tstart=0
Although this workaround appears to be for a Mac, is there any way to do this in Windows/Linux?
I do not have this issue importing into Ubuntu Rythmbox. If this is really an issue of extended attributes where did they come from and why is iTunes rejecting the import with absolutely no message/errors?
This is a major bug (to me) as i am currently unable to sync the mass majority of my music, much of which was purchased from Apple!?!?!
Any help is greatly appreciated!!
Thanks.

UPDATE--> Manually adding folders (drag from explorer and drop on music libray) appears to be functioning as a work around. I have been testing individual folders and so far so good.
While this may be a workaround i have HUNDREDS of folders! =(

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