ITunes Creating Dupilcate Music Files on my Computer

Having investigated thoroughly I can say that, when creating a library or at some point during sychronisation, iTunes is...
1) Creating duplicate mp3 files on my PC's hard drive, i.e. two copies of every song on an album;
2) Splitting songs out of compilation directories and creating new directories by artist for each song, e.g. my compilation album directory for 'Punk Jubilee' no longer exists and, in its place, I now have 20 or so new directories in the root of 'My Music' containing one song for each of the respective artists.
3) Similar to (2) as above, where an artist is named as supporting another artist on a song on their album, a new directory is created referencing both artists containing the song in question.
All very odd. Any thoughts?
Cheers,
Chris.

Having researched further I think the affect is due to allowing iTunes to 'keep iTunes music folder organised' - see advanced tab on preferences. Simple solution is to set the sync option in preferences to warning you if it is to change ANY data on your computer and to also disable auto synching of music. Also, keep a backup of your music library just in case iTunes somehow manages to screw it up. Whoever designed the iTouch/iPhone deserves a medal. The designer of iTunes deserves to be shot!

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