ITunes deleted apps - still a warning message keeps appearing:  'iTunes has found purchased items on the iPhone..."

Hi
I'm trying to delete apps in iTunes Library and from the iPhone.
1.  Goto Library > Apps then I deleted the apps I dont use.
2.  Goto the iPhone, select Apps then deleted apps from there that I'm no longer using.
3.  Click Sync.  Then I get the following warning:
iTunes has found purchased items on the iPhone “4S 16GB iPhone” that are not present in your iTunes library. Do you want to transfer these items from this iPhone back to your iTunes library? If you do not transfer these purchased items to your iTunes library, they will be removed from the iPhone.
4.  I clicked 'Dont Transfer'.  This is fine as I dont want the apps on the iPhone anymore. 
5.  I ejected the iPhone.
6.  Later, I reconnect the iPhone again to iTunes.   The warning appears again:
iTunes has found purchased items on the iPhone “4S 16GB iPhone” that are not present in your iTunes library. Do you want to transfer these items from this iPhone back to your iTunes library? If you do not transfer these purchased items to your iTunes library, they will be removed from the iPhone.
7.  Clicked 'Dont Transfer'.
8.  Then I tried 'Transfer'. This transfered "something" .. I dont know what transferred as I had deleted a few apps.
Why does this warning keep appearing everytime I reconnect?  I'm not sure what it means or what it's meant to do. 
Please can you advise me?  I dont know what I'm doing wrong.

Don't transfer, right click the device in iTunes and select Back Up.
Though, the iTunes interface is designed to be computer - phone and not the other way around, you may need to use something else to preserve your data.

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