Itunes library doesn't see all the songs on my ipod

i manage my music manually as i have more disc space on my ipod than on my hard drive. so i just add stuff to my ipod one album at a time as i get it.
fast forward to me wanting to make a mix cd of the stuff on my ipod, and since i can't get any of the songs off my ipod through itunes i just used yamipod to move them back to my computer to burn to a cd. problem now is that all the music i've added since upgrading to the new itunes isn't showing up on my ipod, yet the space is still gone. when i use windows to search for the music, it shows up and will play in windows media player, but the ipod seems to think these songs are gone.
is there any way to get it to "see" these songs? or does itunes JUST look at the db file ONLY?
TIA!!

First off, I would STRONGLY suggest that a external hard drive would make you life much easier by at least being able to back up your songs on the external drive for when you need them. Even if you don't want them in the iTunes library, you can have them all ready on the external to be re-added as needed. You can get 100's of gigs for under $100 shipped.
Anyway, since you used Yamipod, are all the songs back on the computer? If so, I would go ahead and restore the iPod, let iTunes then resync everything back to the iPod, then switch it back to manual and see if the restore and resync clears up the issue.
Patrick

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    TuneJack Windows Only
    iPod2PC Windows Only
    iGadget Windows Only
    iDump Windows Only
    YamiPod Mac and Windows Versions
    Music Rescue Mac & Windows
    iPodCopy Mac and Windows Versions
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