ITunes not syncing apps after upgrading to ios 5 - Help :(

I downloaded the firmware for ios 5 as it took 60 mins to download last night, and when it got to 10 mins, it errored. I backed up everything, and it gave me the option to restore backup once i had installed the new ios firmware.
However, all it gave me was my contacts and photos. In my itunes library, i have all my apps there, but i am unable, after 2 hours, to find a way to get the apps in my itunes to go on my ipod. I tried nearly everything:
Unticked manually manage music and videos
Restored old back up
Googled for over an hour
Authorised my account
Restarted computer several times
Uninstalled/reinstalled iTunes a few times
Pressed "sync" over 50 times
All my apps are in my library and i have found all the .ipa files on my file browser. The problem isn't redownloading all my apps again, its all the saved levels, settings etc on my games/apps. Here is a pic of my itunes if it helps... http://i51.tinypic.com/34gq1b4.png
Many thanks in advance,
Yoni

I'm having the same problem ! Each time the sync starts it suddenly stops and says finished syncing

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ITunes not syncing apps after upgrading to ios 5 - Help :(

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