ITunes stopping sync at every song with an error..

Got my iPhone back from repairs today and updated it to 5.0.1 and iTunes to the newest version as well, tried syncing all my music back on and EVERY TIME it finds a song which isn't on my HDD anymore or has an error it stops syncing.. what iTunes used to do was just skip them, and list them at the end.
This is really inconvienent as I'm syncing over 3000 songs onto my iPhone, so having to press 'Sync' after every 100 or so songs it gets really frustrating.. I was hoping I'd be able to just leave it syncing over night but guessing I'm gonna have to stay awake till it's done now, lol.
Any help fixing this?
Cheers.

That one's consistent with disk/file damage. The first thing I'd try with that is running a disk check (chkdsk) over your C drive.
XP instructions in the following document: How to perform disk error checking in Windows XP
Vista instructions in the following document: Check your hard disk for errors
Windows 7 instructions in the following document: How to use CHKDSK (Check Disk)
Select both Automatically fix file system errors and Scan for and attempt recovery of bad sectors, or use chkdsk /r (depending on which way you decide to go about doing this). You'll almost certainly have to schedule the chkdsk to run on startup. The scan should take quite a while ... if it quits after a few minutes or seconds, something's interfering with the scan.
Does the chkdsk find/repair any damage? If so, can you get an install to go through properly afterwards?

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