ITunes suddenly not showing all my content, even though the folder does

All of the sudden, iTunes stopped showing all of my content. I have over a hundred movies and several TV shows and all of the sudden, some of the newer stuff that I recently ripped or bought from the iTunes store is no longer showing up in iTunes.
It is still in my iTunes folder however and open and accessible if I click it in Finder. This however is not a good solution as I don't know what is missing from the list and how this ridiculous issue happened.
I am furious. I spend a lot of time adding to my iTunes library for my Apple TV and suddenly, and for no reason that I can discern, content is not showing up, no matter what I do.
I recently moved my iTunes library to a 2 TB Time Capsule and took it off my internal drive, but this worked fine. For a while iTunes kept losing the library, but it no longer asks for it. It points to the right place, plays the content it chooses to see from the right place, and ignore others even though it showed them before and still has them in the library.
I am beyond confused. Can anyone help?

Check on the Summary tab of your iTunes sync settings that you checked "Sync only checked songs and videos" and that you checked "Sync Music" on the Music tab.  Also confirm that your computer authorized for the Apple ID used to purchase this music (in Store>Authorize this computer).

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