ITunes Sync Problems With iPhone & iPod Apps

Since i upgraded my Mbp i started getting this strange problems,
its effecting both iPhones and iPod,
I got a new model MBP so copy my entire itunes collection and sync it with the new mbp,
also copied over the iphone and ipod data (backups)
now everything was fine but the last 2 weeks itunes doesn't let me remove any apps from my iphone or ipod,
if i remove the apps from the phone/ipod and then connect to itunes it will reinstall all the apps,
if i connect to itunes and remove the apps it will some times reinstall or wait till the next time i sync my iphone or ipod and reinstall the same apps,
i have run out of solution to sort this out,
if the apps are deleted this does sort the problems out,
but some of the apps are paid apps, so don't want to loose them,
also if i delete and re-download the apps i still end up with the same problem..
any help on this will be great...
Message was edited by: DJACID

copy entire itunes folder with itunes data files,
remove itunes and completely erase it,
then download a fresh copy of itunes re-install,
and copy the itunes folder back over,
then run the itunes setup,
connect your apple device all should be working fine now...

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