ITunes sync with new PC

Hi guys,
I have an iPhone4 which I setup on my laptop. I had to re-install my OS and de-authorised my machine. After re-installing and authorising the laptop again, it all appears to work, but when I want to sync my apps I get this "Do you want to replace your apps with that on the local machine" or something in that line. Is there a way for me to sync my apps without loosing them? I want to use my laptop again to manage my iphone now, but I am so afraid of syncing or making a backup and risk loosing everything.
Any feedback?

Welcome to the discussions,
A manual backup will help, here's how to:
Disable autosync in iTunes, connect your phone to your new computer and right click on it in the device list and choose backup. iTunes will backup your phone without syncing. Transfer your purchases by right clicking on your phone in the device list and choosing "transfer purchases".
When you connect your phone for the first time, all media content will be erased. But you can restore your settings and app data from your manual backup afterwards. Don't forget to set up at least one contact and event on your new computer to be able to merge calendars and contacts when you sync the phone for the first time.
About backups and what's saved: http://support.apple.com/kb/HT1766
How to back up and restore: http://support.apple.com/kb/HT1414
How to download apps for free again: http://support.apple.com/kb/HT2519

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