ITunes syncs songs already existing on iPod

Hi All,
I have a very strange problem which I have lived with (and ignored) for some time now, but I'd actually be happy if there was a solution to it. Extended searches on Apple Discussions didn't unearth any information, so I thought I'd give it a try.
I am using a MacBook Pro together with an 80GB iPod (latest model available). The iPod is Windows formatted, since I am also using it as an external hard disk.
My problem is that whenever I sync the iPod with iTunes on my Mac, iTunes each time copies many more files over to the iPod than actually necessary. So say I have added only one folder to the iTunes library since the last sync. I plug in my iPod some weeks later and iTunes insists on copying approx. 300-500 files, although these have been in my library for a long, long time and I didn't even touch them in no way (didn't play them, didn't mess with them on a file system basis, etc.).
I suspect that iTunes determines on a file date basis, which items it has to sync to the mobile device so my assumption is there is a mismatch of file dates on the iPod as opposed to the Mac.
Unfortunately I haven't been able to figure out a solution to this problem until now, but maybe anybody else has and can share it with me? I'd be very grateful for any hint.

Just to report back:
Meanwhile I was able to try what peterna suggested - unfortunately, no luck. I connected my iPod to the Mac a couple of minutes ago and again iTunes insisted on synching songs which already were on the iPod (100% sure).
But thanks for proposing a potential solution anyway.
I guess I'll re-format in HFS+ to see if this does the trick...

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