ITunes will not recognise my entire iPhoto library and won't sync

I've been having sync issues with iTunes and Aperture so Decided to just delete Aperture as I don't really see the advantage of it over iPhoto which I find much simpler and user friendly.
After I deleted all my photos and aperture, I went to sync my iPhone 5S to set up the sync for photos with iPhoto. Unfortunately it only recognises a small portion of my iPhoto library. There are only a few events and a few faces to choose from to sync. If I choose to syc all photos then it shows only about 15% of the total number of photos. I've gone back and opened iPhoto but I can see all my events, faces, etc.... (entire library is about 20K pics but iTunes only shows about 2.5K for syncing.
What can I do to fix?
I'm afraid something went wrong because I deleted Aperture. I check before I deleted and both iPhoto and Aperture had the same photos. I use all the latest versions of iTunes and iOS and Yosemite.

Correct.
Copy everything from your old computer, or your backup copy of your old computer, to your new one.

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