Itunes will not recognize when i plug in my ipone 5

not sure what is going on.  when i updated to the new ios 6.1.3 my itunes will not recognize that i have plugged my phone in

So you connect the iPod containing a hard drive. I would guess you are using USB, right? Then Windows opens a window (wow, that's repetative) that identifies this as a USB hard drive.
Am I close?
It sounds like you've told the iPod to act in Disk Mode. On the same preferences pane that you are telling iTunes to open, uncheck the box for enable disk mode. the mini should stop telling your computer it is a hard drive.

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