Iweb and index.html won't work with ftp provider

Hello all.
I have been working on my new website using iweb 09 and I have had problems publishing it to My ftp provider. I have followed all the prompts to the end, but when I have published my site and go looking for it on Web using my URL , it says there is an error.
I have been in touch with my host provider " Just Host" and this is the message they sent me ( I have copied and pasted it ):
As I see all you have uploaded to the *login name* account is index.html.
You have uploaded it incorrectly, to the root folder /login name/, whether index file and the rest of the site for www.mywebsite.com should be located in the /login name/public_html/ folder.
I've moved the file to the proper folder and the site started showing up the error.
Your index.html file is incorrect.
What does this all mean? I went to the apple shop and they suggested using Mobile Me as this would not happen, but that does not suit me as I have just signed up for 4 years with Just Host and I'd like to use them. The apple shop also told me that iweb separates each page of the website and assigns an index.html to each folder for each page and they supposedly are all linked? From the above e-mail if I understand it correctly, this is not the case or do I have to do something for this to happen?
I am at a total lost and having a melt down! Can any one out there help me in plain English as I am only new to all this and am only just getting familiar with the website terminologies? I have searched many forums and have had to look up hundreds of terms in " computer " dictionaries to understand what people are talking about. Please excuse my mental breakdown, as I am really worried that all this work I have put in will go down the chute.
I'm sure you understand how frustrating it can be when something so simple becomes so difficult!
Your help would be greatly appreciated.
Thank you .
Ben.

Hello Ethmoid.
Thank you for your response. I have attached this e-mail to both you and Wyodor as you have been both extremely helpful.
I have managed to get my home page up thanks to your help, but for some reason now , it won't go to the following pages, about,products etc?
As I have done a few web site practices ,I have read that sometimes Iweb has trouble distinguishing between the different sites published in my site or public folders. Could this be the problem? Do I need to delete my old sites?
I tried to change the site name to another name but it won't allow me, every time I retype the new name it keeps jumping back to the extra www.etc.
Also for some reason , all the boxes where my page headings are, they seem to be out of line and a different size even though on my desktop on iweb my front page has all the boxes the same size.
Why is this?
Once again thank you for your help.
Ben

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