IWeb pages reverting to older version- not a browser issue, deleting prefs/caches no help

Hi everyone, forgive me if this is a newb question but I've scoured the internet for answers and all of them I've already tried with no luck. I'm using iWeb and encountering a problem that has me completely stumped. I'm trying to publish changes to my site, (I do not use mobileme, I publish to disk and upload files via Fetch) and for some reason something is changing my html files when I try to upload them. The html files are correct on my hard drive when I publish them, and yet when I upload them, they revert to the older version. This is not a browser issue, as I've cleared my cache, refreshed and tried using Safari, Firefox and Chrome with no luck. I've also tried 're-setting' iWeb by deleting iWeb preferences/cache, and tried moving the domain file from application support, creating a new website, deleting it and then re-loading the old site. Nothing, still the old site. It's new in iWeb, new when I open the html files on my drive, and old as soon as I upload.
I seem to remember having this problem before, and what I found was iWeb's cache kept replacing my new pages with the old ones every time I wanted to upload them. 'Re-setting' iWeb did the trick then, but it's not doing it now. Any ideas on what is going on? It's a little disconcerting seeing a file correct on the disk and then change itself, while uploading, into an incorrect version.
Using:
iWeb 3.0.3
Mac OS 10.6.7
Mac Pro 2.66 Dual core

If you make changes to a page there are files in the Scripts folder that get updated and must be uploaded also.  Depending on what you're using to up load the files it can be setup to upload just those new or modified files.
Cyberduck is a free FTP client that works very well and if used in conjunction with this tutorial will upload only those new or modified files: #2 - Uploading only those new or newly edited and published files when using a 3rd party FTP client
OT

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