IWeb re-creates all of my pages EVERY TIME I publish a few, minor changes..

Question

It all works properly after 1.1.1 but everytime I add a single page (even if I unflag the "include in menu" option) the site marker turns to red. Then, when I publish the changes, iWeb basically re-creates my whole site (taking more than one hour and a half!!!) but then, and here comes the laugh, it only publishes the actual changes (thus, takin no more than 5 minutes to upload them)!!!
So WHY does it attempt to re-create all of my site when it perfectly knows there are only a couple of things that will eventually get uploaded?!?
My site is structured in many different "sites" with various pages each: no matter what, when I add a page in one of the "sites" it starts to re-create all of them.
It's frustrating because it's (obviously) an intollerable waste of time (which doesn't occur when, for istance, I add a blog post or anything else not modifying the site structure).
****...

Answer 1

If I could, I'd send you a couple of screen-shots of
my tree structure just to give you an idea of my
situation... ^^
You are certainly most welcome to send any screenshots my way so that I can take a look. Just send them to: [email protected]. We can also do a chat sometime if I'm online. You can see my online status on my webpage: http://www.dirtdoog.com Just click and chat if I'm online.
The problem, however, is: usually, you may not
publish on a same .Mac account from different
computers/domain-files because any attempt to upload
would modify the homepage of the .Mac site.
This is not true. The default page or site that opens when you type in your short URL (http://web.mac.com/yourname) is currently governed by whatever page you have listed first in order in the Site Organizer in iWeb. You can publish from another Domain file and iWeb will just put the files in a folder right next to the site folder that is already there. Just make sure to name the sites uniquely...otherwise one will overwrite the other. In general when you publish multiple sites with multiple Domain files, the first published site is the default for your short URL. It's probably easier just to resort to the full URLs in any case...
http://web.mac.com/yourname/iWeb/SiteOne
http://web.mac.com/yourname/iWeb/SiteTwo, etc, etc.
Could I do that by keeping the homepage identical in
all of the domain files (actually, it could be my
DISCLAIMER PAGE) and then modifying the others
separately and linking them to each other as external
links?
This seems confusing to me. If you were to revamp your whole site and plan to separate it out into different Domains, I would suggest a separate Domain just for the homepage and disclaimers and what not...this would be like the very top level of your global site. And then you could have links to the various sections in this site and be able to make changes that wouldn't have to affect the other sites under it. But I think you have the general idea.
Before you go doing all of this, it would probably pay to have it well planned out on paper and also well organized on your Mac desktop. During the separating process, you'll need to make several copies of your current Domain file and keep them organized by uniquely name folders (since you cannot change the name of the Domain file). It's an involved process, but logically it makes sense.
As usual, if you find any of this information to be useful, could you do me a favor and provide me with feedback using the "solved" or "helpful" buttons in the title bar of my reply? Thanks.
Don't worry, if you run out of "helpful" and "solved" stars to give out, I'm still more than happy to help in any way that I can!