Java not working correctly after Mavericks Install

I just installed Mavericks on my iMac yesterday. When i go into terminal and run java -version this is what i see.
java version "1.7.0_13"
Java(TM) SE Runtime Environment (build 1.7.0_13-b20)
Java HotSpot(TM) 64-Bit Server VM (build 23.7-b01, mixed mode)
So to me it appears that Java is installer and working as it should ..... but when i try to load into my IDE it tells me that it doesnt see java and prompts me to download it again.
Did mavericks leave a JRE and uninstall the JDK?

I may have found it.
I use Kepler 64b and I do have an Apple 1.6 JDK installed in the JavVirtualMachines folder.
Below is my copy of /Applications/eclipse kepler/Eclipse.app/Contents/MacOS/eclipse.ini
-startup
../../../plugins/org.eclipse.equinox.launcher_1.3.0.v20130327-1440.jar
--launcher.library
../../../plugins/org.eclipse.equinox.launcher.cocoa.macosx.x86_64_1.1.200.v20130 807-1835
-product
org.eclipse.epp.package.standard.product
--launcher.defaultAction
openFile
-showsplash
org.eclipse.platform
--launcher.XXMaxPermSize
256m
--launcher.defaultAction
openFile
--launcher.appendVmargs
-vmargs
-Dosgi.requiredJavaVersion=1.6
-XstartOnFirstThread
-Dorg.eclipse.swt.internal.carbon.smallFonts
-XX:MaxPermSize=256m
-Xms40m
-Xmx512m
-Xdock:icon=../Resources/Eclipse.icns
-XstartOnFirstThread
-Dorg.eclipse.swt.internal.carbon.smallFonts
You may notice the line that says “-Dosgi.requiredJavaVersion=1.6”. I dont know if that is significant but our two systems are subtly different.

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Java not working correctly after Mavericks Install

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