Jumbled Logic Files on External Hard Drive

Hi all,
I have been very nervous to record to my external hard drive lately, because I will do a project, save all the tracks and the project file to my external drive, and occasionally when I go back to re-open the project, there is a different sound clip where another clip was supposed to be.
Even stranger, when I go to my external drive and browse the files, I can pinpoint the file that has changed, and when I single-click on the file, the name suddenly changes to a different file when it becomes highlighted! If I start clicking around on the files in the finder they just get all jumbled up.
I know that all the files are still there, but it seems to be confusing what or where they are.
Even stranger yet, this happened to me on both a PowerMac G4 and a new MacBook AND it happened on TWO different external drives!
The drives were a Maxtor 7200rpm 80gig drive and a newer Western Digital MyBook 250 Gig drive. I thought the new HD would surely solve the problem, but it still happens with some projects!
Has anyone ever heard of this or anything like it? I have been recording to the internal drive lately out of fear of mixing up files!
- Nate
Power Mac G4 Quicksilver and Intel MacBook   Mac OS X (10.4.8)  

Did you check the drives with Disk Utility and make sure they are formatted as Mac OS (extended)? Do you receive any odd messages when you run the utility?
Also, if you have Disk Warrior, run it. There may be some VIB/directory issues, although it seems unlikely that that it would happen on two different drives.
Have you added any 3rd. party utilities, hacks, or other gadgets around the time the problems started?

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