Just got mac pro want to reinstall whole system but.....

I just purchased a mac pro on ebay but it didnt come with the installation disks, nor i guess the os disk. I would love to reinstall the whole os and computer to start like i got it brand new. I have the disks that came with my macbook pro. could i use those? Would i be able to go to apple store and ask them for the installation disks for the mac pro. Would there be anyway to keep the pro programs that are on there now?

If you don't own the pro apps, you can't really use them. If the seller sold it "as is" and "used" Apple probably can't help (and unlikely ebay is a recognized "dealer").
You should definitely wipe the drives... totally zero them out at the least.
With MacIntel, you can't even purchase the OS Installer disks.
You can of course use normal OS X backup programs to copy to another drive in the meantime.

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