Just installed Yosemite, got home and it appears to have wiped my machine.

So I downloaded the free YOSEMITE update from the App store. Ran it and went to work.
When I came back, it was on a screen that offered me to restore from a time machine backup, reinstall Yosemite, go online for backup and run the disc utility.
I do not use timemachine, I use another online backup system.
I was not expecting this.
All I wanted was it to uppgrade.
Any suggestions of what I should do?

I keep getting taken to the OSX Utility Window.
1. Backup from time machine
2. Reinstall OSX
3. Get help online
4. Disc Utility
I have run the back from an old time machine backup, it restarts and then I end up back at this screen.
I have tried to click on Reinstall OSX and it just says, this isnt possible, I have to run it from the App store again
3. Help online is here, with you guys
4. I have run disc util and checked for disk and permission errors, there are none.
What ever I do, it ends up back at this OSX Utility window.
I am Mid 2012 Mac Pro with an SSD hard drive.
I have logged a ticket with Apple Care, but even they don't know why its doing this.
Being an early adopter really isnt all its cracked up to be.

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