K9A2 Platinum esata port and Install and Usage of esata External Hard Drive

I just bought a sata hard drive and an icy dock enclosure for backup purposes. Having never used one before can someone explain how this works?
I have the hard drive in the enclosure, no problem there. I plugged it into the esata port on the back of my motherboard, but vista won't recognize it and when I reboot and go into the BIOS, I don't see it there either.  I have purchased Acronis True Image 11 Home for backup and mirroring purposes. I wish to mirror my existing internal drive to this new external drive.
Questions:
1. Can I use the esata ports on the motherboard for this drive, or should I use the PCI bracket and plug it into one of the existing sata ports on the motherboard? If esata port, exactly how do they work? Are there BIOS settings for the esata ports or do they operate more like a usb connection?
2. Do I need to do anything with this drive before using it; format, install operating system...??
3. Are the esata external drive considered plug and play or do I need to plug it in before I boot my computer.
TIA.

Everything seems to be working as I would have expected at this point, with the exception of the size of the mirrored drives.
I decided to make another mirror onto the 3rd drive making all 3 drives identical. So now I would expect all three drives to show the same "GB free" while viewing with Vista explorer.  The odd thing is, is that which ever drive I make bootable - SATA5 port and becomes the C: drive,  shows 226GB free. The other drives, either as E: or J: will show as 268GB free.  Most be an Acronis or Acronis user (me) issue/oddity?
But bottom line, the sata and esata ports seem to be working as I would expect. Though plugging the external hard drive in before booting (power on or off, needs to be unplugged from the esata port) seems to hang at the FasTrack screen as described above.
My only guess to why this all seems to be working currently is that I don't think I ever had my bios set correctly. After enabling the onboard controller, having the drive actually plugged into SATA5, then rebooting, selecting boot sequence and selecting the raid drive as the first boot device. At least this is my recollection, I made so many bios changes previously that I thought I had it all covered. 
Any thoughts?  I think I will try to get an answer on the Acronis size difference before I try to setup my RIAD 1, since that would require erasing two drives, per your instructions here: https://forum-en.msi.com/index.php?topic=113738.0
Thanks for help once again.

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