Keep having to 'Repair Disk permissions'.

My MBP (2.53 GHZ Intel Core i5, running 10.6.8) keeps running slow, and only improves after Repairing Disk Permissions. I had to run this again this morning - and I'd only ran Permissions repair two days ago! This is what I got;
'Repairing permissions for “Macintosh HD”
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/dt.jar", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/dt.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jce.jar", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jce.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jconsole.jar ", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jconsole.jar ".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/management-a gent.jar", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/management-a gent.jar".
User differs on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib", should be 95, user is 0.
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/dt.jar", should be lrwxr-xr-x , they are -rw-r--r-- .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/dt.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/jce.jar", should be lrwxr-xr-x , they are -rw-r--r-- .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/jce.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/management- agent.jar", should be lrwxr-xr-x , they are -rw-r--r-- .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/management- agent.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/security/bl acklist", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/security/bl acklist".
User differs on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Libraries", should be 95, user is 0.
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Libraries".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle", should be drwxr-xr-x , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle/Contents/Resources/Java/deploy.jar", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle/Contents/Resources/Java/deploy.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle/Contents/Resources/Java/libdeploy.jnilib", should be -rwxr-xr-x , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle/Contents/Resources/Java/libdeploy.jnilib".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Home/lib/security/cacerts", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Home/lib/security/cacerts".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Resources/Java/deploy.jar", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Resources/Java/deploy.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Resources/Java/libdeploy.jnilib", should be -rwxr-xr-x , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Resources/Java/libdeploy.jnilib".
Warning: SUID file "System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/MacOS/ARDAg ent" has been modified and will not be repaired.
Permissions repair complete'
The other day the list was probably 3 times this length, often ending with '...but they are 80'.
Any ideas?
Thanks

Have you run Repair Disk?
http://support.apple.com/kb/TS1417
Have you checked SMART status?
Check the S.M.A.R.T. status on your HD:Applications > Utilities > Disk Utility > in the panel at left, selectthe first item in the list/your HD mechanism>look at the bottom of the mainwindow next to S.M.A.R.T. status and see if it says “Verified” or somethingmore ominous like “Failing.”
Have you run background maintenance scripts?
http://docs.info.apple.com/article.html?artnum=107388
Have you checked in Activity Monitor to see if any processes are using a high ammount of CPU?
Sometimes a process can run amok and use more of the CPU than it should, potentially causing a slowdown and/or heat issues and/or other issues. To check on this, first use your Mac as you normally would, the longer the better (checking this right after starting up may not show you anything). After you’ve used your Mac for awhile (again, the longer the better), go to Applications > Utilities > open Activity Monitor > in the top menu at right, select All Processes in the drop downmenu > click on the column heading titled % CPU (this will update continuously, showing the percentage each process is using) > toward the bottom left of the window, click on CPU (this will show % Idle, which will also tell you how much of the CPU is being used).
Have you done an SMC Reset?
http://support.apple.com/kb/HT3964
And 4GB used, 2GB free btw...
By chance is it referring to RAM usage?

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Constantly having to repair disk permissions after hanging system

From the time I purchased this I've had ongoing issues with the java, flash, OS updates causing the computer to hang forever. Sometimes I end up having to press the off button because Command Q and Command/Option/Escape won't allow a force quit even after a 20 minute wait. I don't know enough about what's going on behind the boot up to know what's wrong. Here is a copy of my console log and this is exactly what they look like each time after I have gone in and done a disk verify, (says it's okay) and then repair disk permissions. I've had to boot to safe mode 3 times today and repair permissions due to this issue. There is nothing plugged into the computer except the power cord. The OS is up to date per Software Update and the only 3rd party software installed is SKYPE ...
1/25/11 5:45:58 PM SoftwareUpdateCheck[520] Checking for updates
1/25/11 5:45:58 PM storeagent[524] port created
1/25/11 5:46:27 PM com.apple.launchd[1] (com.apple.suhelperd[522]) Exited with exit code: 2
1/25/11 5:46:27 PM com.apple.launchd.peruser.501[88] ([0x0-0x3d03d].SoftwareUpdateCheck[520]) Exited with exit code: 102
1/25/11 8:21:42 PM [0x0-0x52052].com.skype.skype[613] Main starting with pid 613 parent pid 88
1/25/11 8:21:43 PM Skype[613] SkypeApplication::init called
1/25/11 10:56:56 PM com.apple.launchd[1] * launchd[1] has started up. *
1/25/11 11:09:29 PM com.apple.fontd[70] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/25/11 11:09:31 PM com.apple.WindowServer[72] Tue Jan 25 23:09:31 Troy-Lindstroms-MacBook.local WindowServer[72] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/25/11 11:09:32 PM com.apple.fontd[70] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/25/11 11:09:40 PM com.apple.UserEventAgent-LoginWindow[79] ALF error: cannot find useragent 1102
1/25/11 11:09:40 PM com.apple.UserEventAgent-LoginWindow[79] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/25/11 11:09:40 PM com.apple.launchd.peruser.501[90] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/25/11 11:09:42 PM fontd[100] Database content version mismatch (stored(15) != expected(14))
1/25/11 11:09:47 PM com.apple.launchd.peruser.501[90] (com.apple.Kerberos.renew.plist[108]) Exited with exit code: 1
1/25/11 11:10:09 PM com.apple.coreservicesd[44] ThrottleProcessIO: throttling disk i/o
1/25/11 11:10:12 PM com.apple.coreservicesd[44] ThrottleProcessIO: throttling disk i/o
1/25/11 11:10:13 PM com.apple.launchd.peruser.501[90] (com.apple.AirPortBaseStationAgent[110]) Exited: Killed
1/25/11 11:10:14 PM com.apple.loginwindow[22] shutdown: / is busy updating; waiting for lock
1/25/11 11:10:33 PM com.apple.launchd[1] * launchd[1] has started up. *
1/25/11 11:11:24 PM com.apple.UserEventAgent-LoginWindow[81] ALF error: cannot find useragent 1102
1/25/11 11:11:24 PM com.apple.UserEventAgent-LoginWindow[81] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/25/11 11:11:24 PM com.apple.launchd.peruser.501[90] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/25/11 11:11:28 PM fontd[101] Database content version mismatch (stored(15) != expected(14))
1/25/11 11:11:28 PM fontd[101] Failed to open read-only database, regenerating DB
1/25/11 11:11:34 PM com.apple.launchd.peruser.501[90] (com.apple.Kerberos.renew.plist[111]) Exited with exit code: 1
1/25/11 11:11:40 PM com.apple.fontd[101] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/25/11 11:11:48 PM com.apple.fontd[101] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/25/11 11:11:49 PM [0x0-0x9009].com.skype.skype[116] Main starting with pid 116 parent pid 90
1/25/11 11:11:51 PM Skype[116] SkypeApplication::init called
1/25/11 11:38:12 PM com.apple.WindowServer[69] Tue Jan 25 23:38:12 Troy-Lindstroms-MacBook.local WindowServer[69] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/26/11 11:36:13 AM [0x0-0x6d06d].com.skype.skype[666] Main starting with pid 666 parent pid 90
1/26/11 11:36:14 AM Skype[666] SkypeApplication::init called
1/26/11 12:25:04 PM com.apple.launchd.peruser.501[90] ([0x0-0x6d06d].com.skype.skype[666]) Exited: Terminated
1/26/11 5:45:58 PM SoftwareUpdateCheck[867] Checking for updates
1/26/11 5:45:58 PM storeagent[870] port created
1/26/11 5:47:17 PM com.apple.launchd[1] (com.apple.suhelperd[869]) Exited with exit code: 2
1/26/11 5:47:17 PM com.apple.launchd.peruser.501[90] ([0x0-0x92092].SoftwareUpdateCheck[867]) Exited with exit code: 102
1/26/11 8:32:58 PM [0x0-0x11011].com.apple.Safari[143] Wed Jan 26 20:32:58 Troy-Lindstroms-MacBook.local Safari[143] <Error>: unknown error code: invalid drawable
1/26/11 8:32:58 PM [0x0-0x11011].com.apple.Safari[143] Wed Jan 26 20:32:58 Troy-Lindstroms-MacBook.local Safari[143] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/26/11 8:33:10 PM [0x0-0x11011].com.apple.Safari[143] Wed Jan 26 20:33:10 Troy-Lindstroms-MacBook.local Safari[143] <Error>: unknown error code: invalid drawable
1/26/11 8:33:24 PM [0x0-0x11011].com.apple.Safari[143] Wed Jan 26 20:33:24 Troy-Lindstroms-MacBook.local Safari[143] <Error>: unknown error code: invalid drawable
1/26/11 10:48:32 PM com.apple.launchd.peruser.501[90] ([0x0-0x11011].com.apple.Safari[143]) Exited: Terminated
1/26/11 10:49:37 PM com.apple.launchd[1] (com.apple.suhelperd[1047]) Exited with exit code: 2
1/26/11 10:49:44 PM com.apple.launchd.peruser.501[90] (com.apple.AirPortBaseStationAgent[113]) Exited: Killed
1/27/11 11:39:52 PM com.apple.launchd[1] * launchd[1] has started up. *
1/27/11 11:40:14 PM com.apple.launchd.peruser.501[84] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/27/11 11:40:15 PM com.apple.UserEventAgent-LoginWindow[77] ALF error: cannot find useragent 1102
1/27/11 11:40:15 PM com.apple.UserEventAgent-LoginWindow[77] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/27/11 11:40:15 PM SoftwareUpdateCheck[98] Checking for updates
1/27/11 11:40:15 PM com.apple.launchd.peruser.501[84] (com.apple.Kerberos.renew.plist[111]) Exited with exit code: 1
1/27/11 11:40:17 PM storeagent[119] port created
1/27/11 11:40:21 PM com.apple.WindowServer[65] Thu Jan 27 23:40:21 Troy-Lindstroms-MacBook.local WindowServer[65] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/27/11 11:40:27 PM [0x0-0xa00a].com.skype.skype[116] Main starting with pid 116 parent pid 84
1/27/11 11:40:29 PM Skype[116] SkypeApplication::init called
1/27/11 11:41:02 PM SoftwareUpdateCheck[98] Downloading "iTunes"
1/27/11 11:42:35 PM SoftwareUpdateCheck[98] Auto-download of "iTunes" SUCCESSFUL.
1/27/11 11:42:35 PM SoftwareUpdateCheck[98] Launching app
1/27/11 11:43:20 PM com.apple.launchd.peruser.501[84] ([0x0-0x6006].SoftwareUpdateCheck[98]) Exited with exit code: 102
1/28/11 9:51:59 AM com.apple.RemoteUI[589] CoreAnimation: rendering error 501
1/28/11 9:52:15 AM com.apple.RemoteUI[589] HTTP2 Streaming Reads ON
1/28/11 11:31:15 AM com.apple.launchd.peruser.501[84] ([0x0-0x10010].com.apple.Safari[134]) Exited: Terminated
1/28/11 11:42:21 AM com.apple.launchd[1] (com.apple.suhelperd[104]) Exited with exit code: 2
1/28/11 3:49:50 PM com.apple.launchd.peruser.501[84] (com.apple.AirPortBaseStationAgent[113]) Exited: Killed
1/28/11 3:49:50 PM com.apple.launchd.peruser.501[84] ([0x0-0x80080].com.apple.iTunesHelper[764]) Exited: Killed
1/28/11 3:50:10 PM com.apple.launchd.peruser.501[84] (com.apple.Dock.agent[88]) Exit timeout elapsed (20 seconds). Killing
1/28/11 3:53:36 PM com.apple.launchd[1] * launchd[1] has started up. *
1/28/11 3:55:16 PM com.apple.launchd.peruser.501[90] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/28/11 3:55:16 PM com.apple.UserEventAgent-LoginWindow[82] ALF error: cannot find useragent 1102
1/28/11 3:55:16 PM com.apple.UserEventAgent-LoginWindow[82] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/28/11 3:55:25 PM com.apple.launchd.peruser.501[90] (com.apple.Kerberos.renew.plist[111]) Exited with exit code: 1
1/28/11 3:55:27 PM com.apple.WindowServer[72] Fri Jan 28 15:55:27 Troy-Lindstroms-MacBook.local WindowServer[72] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/28/11 3:55:40 PM [0x0-0x8008].com.skype.skype[115] Main starting with pid 115 parent pid 90
1/28/11 3:55:41 PM Skype[115] SkypeApplication::init called
1/28/11 11:40:16 PM SoftwareUpdateCheck[419] Checking for updates
1/28/11 11:40:16 PM storeagent[422] port created
1/28/11 11:40:59 PM com.apple.launchd[1] (com.apple.suhelperd[421]) Exited with exit code: 2
1/28/11 11:40:59 PM com.apple.launchd.peruser.501[90] ([0x0-0x56056].SoftwareUpdateCheck[419]) Exited with exit code: 102
1/29/11 3:02:24 AM quicklookd[551] [QL] 'Creating thumbnail' timed out for '<QLThumbnailRequest /Users/troylindstrom/Downloads/images-30.jpeg>' (Start date: 2011-01-29 03:02:04 -0800)
1/29/11 3:05:11 AM quicklookd[555] [QL] 'Creating thumbnail - cancelled' timed out for '<QLThumbnailRequest /Users/troylindstrom/Downloads/About Downloads.pdf>' (Start date: 2011-01-29 03:03:35 -0800)
1/29/11 3:05:52 AM quicklookd[560] [QL] 'Creating thumbnail' timed out for '<QLThumbnailRequest /Users/troylindstrom/Downloads/About Downloads.pdf>' (Start date: 2011-01-29 03:05:32 -0800)
1/29/11 3:06:44 AM quicklookd[563] [QL] 'Creating thumbnail' timed out for '<QLThumbnailRequest /Users/troylindstrom/Downloads/images-3.jpeg>' (Start date: 2011-01-29 03:06:22 -0800)
1/29/11 6:37:03 AM com.apple.launchd.peruser.501[90] ([0x0-0x86086].com.apple.Preview[708]) Exited: Killed
1/29/11 6:37:03 AM com.apple.launchd.peruser.501[90] ([0x0-0x8a08a].com.apple.systemevents[721]) Exited: Killed
1/29/11 6:37:03 AM com.apple.launchd.peruser.501[90] (com.apple.AirPortBaseStationAgent[113]) Exited: Killed
1/29/11 6:37:13 AM com.apple.launchd[1] * launchd[1] has started up. *
1/29/11 6:37:42 AM com.apple.UserEventAgent-LoginWindow[81] ALF error: cannot find useragent 1102
1/29/11 6:37:42 AM com.apple.UserEventAgent-LoginWindow[81] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/29/11 6:37:42 AM com.apple.launchd.peruser.501[89] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/29/11 6:37:50 AM com.apple.WindowServer[54] Sat Jan 29 06:37:50 Troy-Lindstroms-MacBook.local WindowServer[54] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/29/11 6:37:52 AM com.apple.launchd.peruser.501[89] (com.apple.Kerberos.renew.plist[109]) Exited with exit code: 1
1/29/11 6:38:03 AM [0x0-0x8008].com.skype.skype[113] Main starting with pid 113 parent pid 89
1/29/11 6:38:05 AM Skype[113] SkypeApplication::init called
1/29/11 12:14:57 PM [0x0-0x36036].com.apple.CharacterPaletteIM[330] objc[330]: Class ThinDividerSplitView is implemented in both /System/Library/Input Methods/CharacterPalette.app/Contents/MacOS/CharacterPalette and /System/Library/Input Methods/CharacterPalette.app/Contents/PlugIns/RomanView.CharPalettePlugin/Conte nts/MacOS/RomanView. One of the two will be used. Which one is undefined.
1/29/11 12:43:40 PM [0x0-0x39039].com.apple.CharacterPaletteIM[346] objc[346]: Class ThinDividerSplitView is implemented in both /System/Library/Input Methods/CharacterPalette.app/Contents/MacOS/CharacterPalette and /System/Library/Input Methods/CharacterPalette.app/Contents/PlugIns/RomanView.CharPalettePlugin/Conte nts/MacOS/RomanView. One of the two will be used. Which one is undefined.
1/29/11 6:52:46 PM com.apple.launchd.peruser.501[89] ([0x0-0xf00f].com.apple.Safari[131]) Exited: Terminated
1/29/11 6:52:59 PM com.apple.launchd.peruser.501[89] ([0x0-0x1e01e].com.apple.AddressBook[206]) Exited: Terminated
1/29/11 6:52:59 PM loginwindow[29] * -[NSCFArray objectAtIndex:]: index (1) beyond bounds (1)
1/29/11 6:52:59 PM com.apple.loginwindow[29] 2011-01-29 18:52:59.446 loginwindow[29:107] * -[NSCFArray objectAtIndex:]: index (1) beyond bounds (1)
1/29/11 6:53:14 PM com.apple.launchd.peruser.501[89] (com.apple.AirPortBaseStationAgent[111]) Exited: Killed
1/30/11 9:17:52 AM com.apple.launchd[1] * launchd[1] has started up. *
1/30/11 9:19:51 AM com.apple.fontd[66] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/30/11 9:19:51 AM com.apple.WindowServer[68] Sun Jan 30 09:19:51 Troy-Lindstroms-MacBook.local WindowServer[68] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/30/11 9:19:54 AM com.apple.fontd[66] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/30/11 9:20:00 AM com.apple.UserEventAgent-LoginWindow[78] ALF error: cannot find useragent 1102
1/30/11 9:20:00 AM com.apple.UserEventAgent-LoginWindow[78] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/30/11 9:20:00 AM com.apple.launchd.peruser.501[86] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/30/11 9:20:02 AM fontd[98] Database content version mismatch (stored(15) != expected(14))
1/30/11 9:20:04 AM SoftwareUpdateCheck[94] Checking for updates
1/30/11 9:20:05 AM storeagent[102] port created
1/30/11 9:20:08 AM com.apple.launchd.peruser.501[86] (com.apple.Kerberos.renew.plist[109]) Exited with exit code: 1
1/30/11 9:20:38 AM com.apple.launchd.peruser.501[86] (com.apple.AirPortBaseStationAgent[111]) Exited: Killed
1/30/11 9:20:39 AM com.apple.loginwindow[22] shutdown: / is busy updating; waiting for lock
1/30/11 9:20:44 AM com.apple.launchd[1] (com.apple.suhelperd[101]) Exited with exit code: 2
1/30/11 9:20:45 AM com.apple.launchd.peruser.501[86] ([0x0-0x6006].SoftwareUpdateCheck[94]) Exited with exit code: 102
1/30/11 9:20:49 AM com.apple.coreservicesd[44] ThrottleProcessIO: throttling disk i/o
1/30/11 9:20:55 AM com.apple.coreservicesd[44] ThrottleProcessIO: throttling disk i/o
1/30/11 9:21:16 AM com.apple.launchd[1] * launchd[1] has started up. *
1/30/11 9:22:04 AM com.apple.UserEventAgent-LoginWindow[81] ALF error: cannot find useragent 1102
1/30/11 9:22:04 AM com.apple.UserEventAgent-LoginWindow[81] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/30/11 9:22:04 AM com.apple.launchd.peruser.501[89] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/30/11 9:22:07 AM fontd[101] Database content version mismatch (stored(15) != expected(14))
1/30/11 9:22:07 AM fontd[101] Failed to open read-only database, regenerating DB
1/30/11 9:22:11 AM com.apple.fontd[101] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/30/11 9:22:13 AM com.apple.launchd.peruser.501[89] (com.apple.Kerberos.renew.plist[111]) Exited with exit code: 1
1/30/11 9:22:19 AM com.apple.WindowServer[69] Sun Jan 30 09:22:19 Troy-Lindstroms-MacBook.local WindowServer[69] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/30/11 9:22:26 AM com.apple.fontd[101] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/30/11 9:22:26 AM [0x0-0x9009].com.skype.skype[116] Main starting with pid 116 parent pid 89
1/30/11 9:22:28 AM Skype[116] SkypeApplication::init called
1/30/11 10:33:53 AM com.apple.launchd.peruser.501[89] (com.apple.AirPortBaseStationAgent[113]) Exited: Killed
1/30/11 10:34:02 AM com.apple.launchd[1] * launchd[1] has started up. *
1/30/11 10:34:26 AM com.apple.launchd.peruser.501[86] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/30/11 10:34:26 AM com.apple.UserEventAgent-LoginWindow[79] ALF error: cannot find useragent 1102
1/30/11 10:34:26 AM com.apple.UserEventAgent-LoginWindow[79] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/30/11 10:34:28 AM com.apple.launchd.peruser.501[86] (com.apple.Kerberos.renew.plist[107]) Exited with exit code: 1
1/30/11 10:34:32 AM [0x0-0x8008].com.skype.skype[112] Main starting with pid 112 parent pid 86
1/30/11 10:34:36 AM Skype[112] SkypeApplication::init called
1/30/11 3:37:45 PM com.apple.launchd[1] * launchd[1] has started up. *
1/30/11 3:50:19 PM com.apple.fontd[68] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/30/11 3:50:19 PM com.apple.WindowServer[69] Sun Jan 30 15:50:19 Troy-Lindstroms-MacBook.local WindowServer[69] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/30/11 3:50:21 PM com.apple.fontd[68] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/30/11 3:50:52 PM com.apple.coreservicesd[45] ThrottleProcessIO: throttling disk i/o
1/30/11 3:53:14 PM com.apple.UserEventAgent-LoginWindow[80] ALF error: cannot find useragent 1102
1/30/11 3:53:14 PM com.apple.UserEventAgent-LoginWindow[80] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/30/11 3:53:14 PM com.apple.launchd.peruser.501[90] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/30/11 3:53:15 PM fontd[101] Database content version mismatch (stored(15) != expected(14))
1/30/11 3:53:18 PM com.apple.coreservicesd[45] ThrottleProcessIO: throttling disk i/o
1/30/11 3:53:20 PM com.apple.launchd.peruser.501[90] (com.apple.Kerberos.renew.plist[109]) Exited with exit code: 1
1/30/11 4:00:53 PM com.apple.launchd.peruser.501[90] (com.apple.AirPortBaseStationAgent[111]) Exited: Killed
1/30/11 4:12:07 PM com.apple.launchd[1] * launchd[1] has started up. *
1/30/11 4:12:56 PM com.apple.UserEventAgent-LoginWindow[81] ALF error: cannot find useragent 1102
1/30/11 4:12:56 PM com.apple.UserEventAgent-LoginWindow[81] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/30/11 4:12:56 PM com.apple.launchd.peruser.501[89] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/30/11 4:12:59 PM fontd[101] Database content version mismatch (stored(15) != expected(14))
1/30/11 4:12:59 PM fontd[101] Failed to open read-only database, regenerating DB
1/30/11 4:13:06 PM com.apple.launchd.peruser.501[89] (com.apple.Kerberos.renew.plist[111]) Exited with exit code: 1
1/30/11 4:13:15 PM com.apple.fontd[101] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/30/11 4:13:21 PM com.apple.fontd[101] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/30/11 4:13:21 PM [0x0-0x9009].com.skype.skype[116] Main starting with pid 116 parent pid 89
1/30/11 4:13:23 PM Skype[116] SkypeApplication::init called
1/30/11 5:12:33 PM com.apple.WindowServer[69] Sun Jan 30 17:12:33 Troy-Lindstroms-MacBook.local WindowServer[69] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/30/11 5:12:34 PM com.apple.RemoteUI[169] CoreAnimation: rendering error 501
1/30/11 5:12:46 PM com.apple.launchd.peruser.501[89] ([0x0-0x9009].com.skype.skype[116]) Exited: Terminated
1/30/11 5:12:49 PM com.apple.RemoteUI[169] HTTP2 Streaming Reads ON
1/30/11 5:13:12 PM System Preferences[175] .scriptSuite warning for result type of command 'timedLoad' in suite 'SystemPreferences': the type NSNumber ('long') doesn't match the result Apple event code ('doub').
1/31/11 12:17:59 AM com.apple.launchd[1] (com.apple.aslmanager) Throttling respawn: Will start in 5 seconds
1/31/11 12:54:05 AM com.apple.launchd.peruser.501[89] ([0x0-0x18018].com.apple.Safari[180]) Exited: Terminated
1/31/11 1:31:00 AM com.apple.launchd.peruser.501[89] (com.apple.AirPortBaseStationAgent[113]) Exited: Killed
1/31/11 1:31:24 AM com.apple.launchd[1] * launchd[1] has started up. *
1/31/11 1:33:28 AM com.apple.fontd[66] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/31/11 1:33:29 AM com.apple.WindowServer[67] Mon Jan 31 01:33:29 Troy-Lindstroms-MacBook.local WindowServer[67] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/31/11 1:33:31 AM com.apple.fontd[66] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/31/11 1:33:48 AM com.apple.UserEventAgent-LoginWindow[76] ALF error: cannot find useragent 1102
1/31/11 1:33:48 AM com.apple.UserEventAgent-LoginWindow[76] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/31/11 1:33:48 AM com.apple.launchd.peruser.501[86] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/31/11 1:33:50 AM fontd[96] Database content version mismatch (stored(15) != expected(14))
1/31/11 1:33:54 AM com.apple.launchd.peruser.501[86] (com.apple.Kerberos.renew.plist[105]) Exited with exit code: 1
1/31/11 1:34:13 AM com.apple.coreservicesd[44] ThrottleProcessIO: throttling disk i/o
1/31/11 1:34:13 AM com.apple.coreservicesd[44] ThrottleProcessIO: throttling disk i/o
1/31/11 1:44:00 AM com.apple.launchd.peruser.501[86] (com.apple.AirPortBaseStationAgent[107]) Exited: Killed
1/31/11 1:44:10 AM com.apple.launchd[1] * launchd[1] has started up. *
1/31/11 1:44:43 AM com.apple.launchd.peruser.501[86] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/31/11 1:44:43 AM fontd[95] Database content version mismatch (stored(15) != expected(14))
1/31/11 1:44:43 AM fontd[95] Failed to open read-only database, regenerating DB
1/31/11 1:44:44 AM com.apple.UserEventAgent-LoginWindow[79] ALF error: cannot find useragent 1102
1/31/11 1:44:44 AM com.apple.UserEventAgent-LoginWindow[79] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/31/11 1:44:45 AM com.apple.launchd.peruser.501[86] (com.apple.Kerberos.renew.plist[108]) Exited with exit code: 1
1/31/11 1:44:45 AM com.apple.fontd[95] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/31/11 1:44:57 AM com.apple.fontd[95] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/31/11 1:44:58 AM [0x0-0x8008].com.skype.skype[112] Main starting with pid 112 parent pid 86
1/31/11 1:45:00 AM Skype[112] SkypeApplication::init called
1/31/11 2:00:28 AM com.apple.launchd[1] (com.apple.suhelperd[141]) Exited with exit code: 2
Can anyone see the issue or tell me what I need to do to fix this thing???

Which MacBook model? Did it come with OSX 10.6 or did you upgrade it?

Worried about need to constantly repair disk permissions

Here is my analysis and conclusions as to why I need to constantly repair disk permissions:
I recently got the top-o'-the-line iMac (see info below) which shipped with Lion but since I wanted Snow Leopard (just because I have a few PowerPC games that I can't live without) I reformatted the hard drive - into 1 partition from the 2 that Lion had - and installed Snow Leopard and went back to business as usual....only with one **** great and fast computer. BTW, as far as I know this computer is exactly the same computer that shipped with Snow Leopard prior to Lion's introduction. I swore that I would never get another desktop computer because this one would last me forever. My only hesitation now is because the need to constantly repair permissions means something is not right. On the one hand I could just keep on repairing (daily?) the permissions for the next 20 years, or.... what? Is it possible (or should I be asking Apple itself instead of in this forum) that there is some other difference between the Snow Leopard and the Lion versions of this iMac - is this what "firmware" is all about? - that produces this constant need to repair permissions? If that's the case, would Apple give me a Snow Leopard-friendly logic board (and/or install the correct firmware) in exchange for the Lion logic board - or am I just going to have to live with having to perform this permissions-update function? Or is having to repair disk permissions not a big deal or something worrying about? Any ideas would be appreciated - thanks!
Hardware Overview:
Model Name:          iMac
Model Identifier:          iMac12,2
Processor Name:          Intel Core i7
Processor Speed:          3.4 GHz
Number Of Processors:          1
Total Number Of Cores:          4
L2 Cache (per core):          256 KB
L3 Cache:          8 MB
Memory:          12 GB
Boot ROM Version:          IM121.0047.B0A
SMC Version (system):          1.72f2
Hardware UUID:          B9D5A82D-6205-5FDD-BE77-46CC72811374

You do not need to repair permissions unless there's a specific problem.
For your info;
http://support.apple.com/kb/TS1448

Is anyone else having problems with Verifying and Repairing Disk permissions?

Hey folks, every time I try to verify and repair disk permissions lately, this is all I get...
Verifying permissions for “Macintosh HD”Group differs on “Library/Printers/InstalledPrinters.plist”; should be 80; group is 0.Permissions differ on “Library/Printers/InstalledPrinters.plist”; should be -rw-rw-rw- ; they are -rw-r--r-- .Warning: SUID file “System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/MacOS/ARDAg ent” has been modified and will not be repaired.
I usually get a long list, then repair it, and it seems to keep things clean.
I'm having trouble with my address book.
When I move the mouse down the bottom of the page my dock doesn't come up right away, sometimes it won't - I have to command tab to go to another program.
So I'm wondering if these are related. Thanks for any help!

Not specifically Sky & Yahoo, but there seem to be quite a few threads with password problems and Yahoo. Is that what you are experiencing. Long thread here:
https://discussions.apple.com/thread/3804431
And a thread here where Gtj56 came up with a fix that worked for him:
https://discussions.apple.com/thread/3800540?start=15&tstart=0

Installing a trial version of the Illustrator and InDesign App in Creative Cloud on my Mac is impossible. Keep getting 'Installation failed' notices. More information gives 0 fatal error(s), 0 error(s). Already repaired disk permissions in Disk Utility bu

Installing a trial version of the Illustrator and InDesign App in Creative Cloud on my Mac is impossible. Keep getting 'Installation failed' notices. More information gives 0 fatal error(s), 0 error(s). Already repaired disk permissions in Disk Utility but nothing seems to work. Exit code: 7.

Hi Maarton,
Please follow the link to resolve the issue: Errors "Exit Code: 6," "Exit Code: 7" | CS5, CS5.5
-Ankit

Repairing disk permissions keeps giving same message

I routinely verify my HD and repair disk permissions. The latter often indicates repairs are needed, especially after installation of new software or updates (I repair before and after). But once repaired, if I verify the permissions they come out ok -- i.e., no repairs are needed. Until just recently. I am now getting the following message after repairing permissions:
Verify permissions for “Macintosh HD”
Determining correct file permissions.
Permissions differ on ./private/var/log/secure.log, should be -rw------- , they are -rw-r-----
Permissions verification complete
The privileges have been verified or repaired on the selected volume
If I verify permissions after repairing this, I get the same message again. So the repair is not holding. I am running OS X 10.4.11 and I recall that on earlier OS's there were sometimes innocuous repairs that kept being required, but that were not really a problem. But under 10.4.11 a repair has usually been good, and clears the deck. Until now. Any ideas?
Update: I am no longer having this problem. Possibly I was clicking on the verify permissions button instead of the repair button. I have used DU many times, so this would be a fairly boneheaded thing to do at this point. Maybe familiarity breeds carelessness? In any event, I often get the message above when I check disk permissions, and I would be curious to know why it is one of the more common repairs needed. So let's make that my question instead...
TIA
Message was edited by: Drake Bradley

Not to worry about it, that secure.log is a common one for that.
Repair Permissions checks Library>Receipts to find out the proper Permissions, that file's Permissions may exist in more than one and/or some OS component doesn't know the new/latest permissions when using it.

"Repair Disk Permissions" keeps showing the same permission differences

After the recent software updates, I suddenly cannot use my eFax Messenger. This happened once before, but I was able to fix the problem by running "Repair Disk Permissions" in Disk Utility.
This time "Repair Disk Permissions" did not fix the problem. Not only that, I noticed the same permission differences showing up again and again when I repeated Repair Disk Permissions.
Is the permissions database no longer accurate? Does anyone have any suggestions on how to resolve the permission differences? I notice that others have reported similar issues on this forum, but no definite resolutions have been posted.
Thanks for any help you can give me.

..."As long as the repair ends up with the message 'repairs complete' or words to that effect, you are OK."...
I don't know who started with the "repairs complete means everything is fine" business, but they were wrong and it is repeated far too often by too many people on this site.
Considering all of the messages erroneously being dismissed as "informational", it is ironic that the one message that is actually just "informational" is the one being given special significance.
The "repairs complete" message only means that the process has stopped. Try starting to repair permissions, then immediately click the "Stop permissions repair" button. Try logging in to a non-admin account and start a run -- when a password is requested, cancel. Try repairing permissions when there are problems with the permissions database. You will see messages such as "Stopped by user", "insufficient privileges" or "underlying task reported failure on exit, but in every case, the report will end with the "Permissions repair complete" message.
With respect to the OP's question, the overall "repair permissions" system as it stands in 10.5 has the appearance of an unfinished product (it received major revisions in the transition from 10.4). Without specific details, all anyone can say is that the error messages are likely false positives - except for any true positives that might be present among them.

Does anyone know what this Repair Disk Permissions stuff means?

Safari hung on me today, so i decided to repair disk permissions. This text keeps coming up. Is my computer gonna explode or something? Thanks in advance for any help...my OS is 10.6.7
Repairing permissions for “Macintosh HD”
Permissions differ on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/dt.jar", should be lrwxr-xr-x , they are lrw-r--r-- .
Repaired "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/dt.jar".
Permissions differ on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/jce.jar", should be lrwxr-xr-x , they are lrw-r--r-- .
Repaired "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/jce.jar".
Permissions differ on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/jconsole.ja r", should be lrwxr-xr-x , they are lrw-r--r-- .
Repaired "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/jconsole.ja r".
Permissions differ on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/management- agent.jar", should be lrwxr-xr-x , they are lrw-r--r-- .
Repaired "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/management- agent.jar".
User differs on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib", should be 0, user is 95.
Repaired "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib".
Permissions differ on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/dt.jar", should be -rw-r--r-- , they are -rwxr-xr-x .
Repaired "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/dt.jar".
Permissions differ on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/jce.jar", should be -rw-r--r-- , they are -rwxr-xr-x .
Repaired "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/jce.jar".
Permissions differ on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/management -agent.jar", should be -rw-r--r-- , they are -rwxr-xr-x .
Repaired "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/management -agent.jar".
Permissions differ on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/security/b lacklist", should be lrwxr-xr-x , they are lrw-r--r-- .
Repaired "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/security/b lacklist".
User differs on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Libraries", should be 0, user is 95.
Repaired "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Libraries".
Permissions differ on "System/Library/Java/Support/Deploy.bundle/Contents/Home/lib/security/cacerts", should be lrwxr-xr-x , they are lrw-r--r-- .
Repaired "System/Library/Java/Support/Deploy.bundle/Contents/Home/lib/security/cacerts".
Permissions differ on "System/Library/Java/Support/Deploy.bundle/Contents/Resources/Java/deploy.jar", should be lrwxr-xr-x , they are lrw-r--r-- .
Repaired "System/Library/Java/Support/Deploy.bundle/Contents/Resources/Java/deploy.jar".
Permissions differ on "System/Library/Java/Support/Deploy.bundle/Contents/Resources/JavaPluginCocoa.b undle/Contents/Resources/Java/deploy.jar", should be lrwxr-xr-x , they are lrw-r--r-- .
Repaired "System/Library/Java/Support/Deploy.bundle/Contents/Resources/JavaPluginCocoa.b undle/Contents/Resources/Java/deploy.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/dt.jar", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/dt.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jce.jar", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jce.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jconsole.jar ", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jconsole.jar ".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/management-a gent.jar", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/management-a gent.jar".
User differs on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib", should be 95, user is 0.
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/dt.jar", should be lrwxr-xr-x , they are -rw-r--r-- .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/dt.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/jce.jar", should be lrwxr-xr-x , they are -rw-r--r-- .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/jce.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/management- agent.jar", should be lrwxr-xr-x , they are -rw-r--r-- .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/management- agent.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/security/bl acklist", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/security/bl acklist".
User differs on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Libraries", should be 95, user is 0.
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Libraries".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle", should be drwxr-xr-x , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle/Contents/Resources/Java/deploy.jar", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle/Contents/Resources/Java/deploy.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle/Contents/Resources/Java/libdeploy.jnilib", should be -rwxr-xr-x , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle/Contents/Resources/Java/libdeploy.jnilib".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Home/lib/security/cacerts", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Home/lib/security/cacerts".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Resources/Java/deploy.jar", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Resources/Java/deploy.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Resources/Java/libdeploy.jnilib", should be -rwxr-xr-x , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Resources/Java/libdeploy.jnilib".
Warning: SUID file "System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/MacOS/ARDAg ent" has been modified and will not be repaired.
Permissions repair complete

Pleasant dreams.
Please note the items listed under Legend in the right sidebar of this page.

Repair Disk Permissions question...

I keep getting this after I repair disk permissions :
"Permissions differ on "System/Library/LaunchDaemons/com.apple.usbmuxd.plist", should be -rw-r--r-- , they are -rwxr-xr-x .
Warning: SUID file "System/Library/CoreServices/Finder.app/Contents/Resources/OwnerGroupTool" has been modified and will not be repaired.
Group differs on "private/etc/cups", should be 0, group is 26.
Permissions differ on "private/var/spool/cups/cache/rss", should be drwxr-xr-x , they are drwxrwxr-x ."
Can someone please tell me what this means?...and especially the Warning: SUID...something modified and will not be repaired?...is this something I should be concerned about?...
Wasn't sure where to put this question...if it's in the wrong place please tell me and i'll post it elsewhere...
Thanks for help in advance...
M
Message was edited by: Morris Taub
Message was edited by: Morris Taub

Hi Morris,
Here's the Apple article on the subject:
http://support.apple.com/kb/TS1448
Apparently it is not a problem. Mine started giving these after the 10.5.5 update.

Dangers of repairing disk permissions

Are there any things that can go wrong whilst you're trying to repair disk permissions on your startup disk?

Using an older version of OS X and Disk Utility, yes.
Maybe... if there are pre-existing issues with the file system?
Not having a good backup / image.
Using Repair Permissions for something that has nothing to do with, and can't be corrected by, and you should be looking and using other tools and troubleshooting. Too often people think this will perform some magic or something.

Constantly repairing disk permissions for Spotlight to work

I am constantly having to use Disk Utility and repair my disk permissions in order to get Spotlight to work. Often I'll type something such as an application and the only thing that will show up is the Definition from the dictionary.
Repairing the disk permissions seems to fix the problem, but it doesn't take long before I need to once again go in and repair in order to get Spotlight working again. I've tried dragging the whole hard drive into the exclusions list and then removing it again so the index will rebuild. That also works but again only lasts a short time.
Any help would be much appreciated!

whiskey sour wrote:
I hear a lot about 'defraggin' in Windows. Is there something similar in Mac, ie: is Repairing Disk Permissions something similar?
They're entirely different things. A "defragment" operation moves files around to combine split segments of files and consolidate free space. A "repair permissions" operation examines the permissions settings of system files and resets any that seem to be wrong.
Here's what Apple has to say about defragmenting a Mac disk:
http://support.apple.com/kb/HT1634

Problem repairing disk permissions

Hey all, I'm trying to help a friend with a sick macbook I think it's a pro, but I definitely know he's running OS 10.5.
I tried to repair his disk permissions in the Disk Utility, and I keep getting the same three messages- "ACL found but not expected in system folder", "ACL found but not expected in Library", and the same thing in one other folder which I forget right now....
I ran the "repair disk permissions" operation three times in a row and keep getting the same three messages. Each running takes about ten minutes and the progress bar hangs at about 15% completion for 90% of the operation. Then in the last minute, it charges across the screen, the operation completes and those messages pop up.
I've never had anything like this happen (when repeated attempts at repairing seemingly don't accomplish the repair of permissions).
Any advice? No other repairs are being logged.

Leopard 10.5 has Access Control Lists enabled and uses them for some of the system folders. The Disk Utility is just informing you that an Access Control List was found, but the information used to repair the permissions doesn't show one. Probably what happened is the "apply to enclosed items" was used from the Get Info window, which added ACLs to the enclosed items. The Get Info window doesn't show extended permissions very well, so applying the permissions to enclosed items shouldn't be used on system files and folders.

Disk Permissions, Repair Disk Permissions

Can someone give me some information regarding Disk Permissions. I've been having some problems of late, and have seen several posts where the user was told to "repair their disk permissions." I went into Disk Utility and ran "Verify Disk Permissions" and a TON of stuff came up. Of course, I don't know what any of it means. Should I go ahead and "Repair Disk Permissions"? What does this do, exactly?

Mac Medic ([email protected]) wrote:
I would start by searching driver software for the cardbus adapter. Also, Make sure you have all the Mac OS X and iTunes updates.
That card doesn't require a driver according to their Web site.
Also, did you read her original post? She said she has a MacBook with USB 1.1. All MacBooks came with USB 2.0. How would you even put that card in a MacBook with no PCMCIA card slot?
Dave M.
MacOSG Founder/Ambassador  An Apple User Group 
Creator of Mac611 - Mobile Mac Support (designed exclusively for an iPhone/iPod touch)
Sorry about the mistake...I'm on a PowerBook G4 PowerPC, NOT a MacBook (I've been looking into getting a used MacBook--guess I had it on the brain when I posted.) Agreed, per the site, I shouldn't need any drivers, however, a driver disk did come with the card. Interesting. Guess I'll look into that next.
If that doesn't help, guess it's back to the drawing board. Perhaps a faulty card?

Why isn't Disk Utility clear after "Repair Disk Permissions"?

Having used my computer for several days I decided to use Disk Utility to “Repair Disk Permissions” after a few hours of use.
2008-11-29 08:30:17 -0800: Disk Utility started.
2008-11-29 08:30:24 -0800: Repairing permissions for “Macintosh HD”
2008-11-29 08:30:24 -0800: Reading permissions database.
2008-11-29 08:30:24 -0800: Reading the permissions database can take several minutes.
2008-11-29 08:43:29 -0800: Permissions differ on "private/var/log/secure.log", should be -rw------- , they are -rw-r----- .
2008-11-29 08:48:26 -0800: Group differs on "private/etc/cups", should be 0, group is 26.
2008-11-29 08:48:28 -0800:
2008-11-29 08:48:28 -0800: Permissions repair complete
2008-11-29 08:48:28 -0800:
2008-11-29 08:48:28 -0800:
I shut down the computer, turned off its power for 1 minute and restarted. I initiated Disk Utility once again.
2008-11-29 09:16:42 -0800: Disk Utility started.
2008-11-29 09:20:55 -0800: Repairing permissions for “Macintosh HD”
2008-11-29 09:20:55 -0800: Reading permissions database.
2008-11-29 09:20:55 -0800: Reading the permissions database can take several minutes.
2008-11-29 09:38:47 -0800: Group differs on "private/etc/cups", should be 0, group is 26.
2008-11-29 09:38:49 -0800:
2008-11-29 09:38:49 -0800: Permissions repair complete
2008-11-29 09:38:49 -0800:
2008-11-29 09:38:49 -0800:
When Disk Utility was finished, I clicked on “Clear History” and reran “Repair Disk Permissions.”
2008-11-29 09:42:01 -0800: Repairing permissions for “Macintosh HD”
2008-11-29 09:42:01 -0800: Reading permissions database.
2008-11-29 09:42:01 -0800: Reading the permissions database can take several minutes.
2008-11-29 10:00:19 -0800:
2008-11-29 10:00:19 -0800: Permissions repair complete
2008-11-29 10:00:19 -0800:
2008-11-29 10:00:19 -0800:
Now everything seems clear.
My question...
Why did I initially see:
2008-11-29 08:43:29 -0800: Permissions differ on "private/var/log/secure.log", should be -rw------- , they are -rw-r----- .
2008-11-29 08:48:26 -0800: Group differs on "private/etc/cups", should be 0, group is 26.
and why after restarting should I end up with only
2008-11-29 09:38:47 -0800: Group differs on "private/etc/cups", should be 0, group is 26.
and after “Clear History” and rerunning Disk Utility why is everything clear until I start using the computer again?
I’ve had it explained that “Group differs on "private/etc/cups", should be 0, group is 26” is not meaningful, but I’d like to know WHY it happens. I’d also like to know why “ Permissions differ on "private/var/log/secure.log", should be -rw------- , they are -rw-r----- .” initially appears.
Thank you,
ZTIWYM3ZUI

As a casual "Apple Discussions" user it hadn't occurred to me that if a question had been answered previously, it should never be asked again.
It's not that. It's because the problem's been beaten to death over the past fourteen months, since Apple shipped Leopard, that most consider it common knowledge, no matter where one's been visiting or how often. Every Apple/Macintosh related website has addressed the never ending issue. Finally, since the forums Help file says:
*I have a question or issue—how do I search for answers?*
+It's possible that your question or issue has already been answered by other members so do a search before posting a question. On most Apple Discussions pages, you'll find a Search Discussions box in the upper right corner. Enter a search term (or terms) in the field and press Return. Your results will appear as a list of links to posts below the Search Discussions Content pane.+
+You can also refine your search by using the options in the Search Discussions Content pane. Click the Search Tips link for help with our search features. You can streamline your results by restricting your search terms by category or forum, specifying a date range, or searching for posts by username. You can also search the User Tips Library.+
Maybe that should be retitled: *+I have a question or issue—how do I resolve it?+*
Just out of curiosity, I wonder if any of these exceptional people can figure out my signature.
ZTIWYM3ZUI - "time is what you make—use it" or something of that nature.

Keep having to 'Repair Disk permissions'.

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