Keychain, permissions and general system wide issues

Hi all,
Sorry for the slightly odd title to this post but I was at a loss what to specifically post this under due to the sytem wide nature of the problems I am experiencing with a Mid 2009 13" MBP.
The following problems exist with any user, including admins.
I was first made aware of an issue when the MBP stopped connecting to secure websites - Chrome would just give the "Aw Snap" error and Safari would give the error saying it couldn't establish a secure connection to the server etc.
After searching this, I was led to a community page saying to do a keychain first aid which then threw up the follwing results (the login keychain did not contain any items):
Verification started
Checking keychain configuration for testuser (user ID=1079)
Home directory is /Users/testuser
Checked login keychain
Unable to open ~/Library/Keychains/login.keychain (-25312)
Checked default keychain
Checked contents of ~/Library/Keychains/login.keychain
Unable to open ~/Library/Keychains/login.keychain (-25312)
Problems were found; you should choose the Repair option to fix them
Verification failed
Repair started
Checking keychain configuration for testuser (user ID=1079)
Home directory is /Users/testuser
Checked login keychain
Unable to open ~/Library/Keychains/login.keychain (-25312)
Failed to rename /Users/testuser/Library/Keychains/login.keychain to /Users/testuser/Library/Keychains/login_renamed.keychain, reason: The operation couldn’t be completed. Invalid argument
Checked default keychain
Checked contents of ~/Library/Keychains/login.keychain
Unable to open ~/Library/Keychains/login.keychain (-25312)
Warning: some problems were not fixed
Repair failed
As well as this issue I am also experiencing:
Failure of Spotlight to open native applications e.g. I want to open Kechain Access so start to type keychain, but instead of showing the result for the application I only get a dictionary result.
If I manually try to open native apps from the Applications directory they do not open
Failure to connect to my work network drives
I came across this post on the community https://discussions.apple.com/message/25579695#2557969 and tried the suggestions of Linc Davis and specifically his suggestion about restarting in safe mode.
This does temporarily fix all of the issues that I am experiencing but they just reappear again after a while of using the laptop.
I had recently bought an SSD to upgrade this MBP and shortly after these problems started I decided that I would take the opportunity to install it and hope that a fresh install of ML might fix the issues.
Unfotunatley even after this, the problems just resurfaced.
I have tried two fresh installs of ML and since the 2nd install I haven't installed a single 3rd party application or synced any of my user data back to the MBP.
I have even tried a 2nd SSD in case the problem was somehow related to it.
All problems still persist and I am at a loss what to try next, hence my post here to the community!
It now feels like these problems may well be linked to another hardware issue but this goes beyond my experience with these types of issues!
Any help / suggestiosn would be hugely appreciated!
Justin

Hey Eric,
I just made time to go get the results for you.
In addition to the problems I detailed above, when I first tried to download Etrecheck, the system refused stating that there was not enough space on the hard drive. However, after using the inspector on Macintosh HD it was clearly not the case. Aftyer rebooting into safe mode and restarting I was able to download it. Currently having no issues due to safe mode restart but they will return eventually over the next few hours of usage.
Here's the Etrecheck results, thanks in advance
Hardware Information:
          MacBook Pro (13-inch, Mid 2009)
          MacBook Pro - model: MacBookPro5,5
          1 2.26 GHz Intel Core 2 Duo CPU: 2 cores
          8 GB RAM
Video Information:
          NVIDIA GeForce 9400M - VRAM: 256 MB
System Software:
          OS X 10.8.5 (12F45) - Uptime: 0 days 0:0:37
Disk Information:
          Crucial_CT240M500SSD1 disk0 : (240.06 GB)
                    disk0s1 (disk0s1) <not mounted>: 209.7 MB
                    Macintosh HD (disk0s2) / [Startup]: 239.2 GB (222.32 GB free)
                    Recovery HD (disk0s3) <not mounted>: 650 MB
          HL-DT-ST DVDRW  GS23N 
USB Information:
          Apple Inc. Built-in iSight
          Apple Internal Memory Card Reader
          Apple Inc. Apple Internal Keyboard / Trackpad
          Apple Computer, Inc. IR Receiver
          Apple Inc. BRCM2046 Hub
                    Apple Inc. Bluetooth USB Host Controller
Thunderbolt Information:
Gatekeeper:
          Anywhere
Launch Daemons:
          [loaded] com.adobe.fpsaud.plist Support
User Login Items:
          Bertha
          UNKNOWN
Internet Plug-ins:
          FlashPlayer-10.6: Version: 13.0.0.206 - SDK 10.6 Support
          Flash Player: Version: 13.0.0.206 - SDK 10.6 Support
          QuickTime Plugin: Version: 7.7.1
          JavaAppletPlugin: Version: 14.3.0 - SDK 10.8 Check version
Audio Plug-ins:
          AirPlay: Version: 1.7 - SDK 10.8
          iSightAudio: Version: 7.7.1 - SDK 10.8
iTunes Plug-ins:
          Quartz Composer Visualizer: Version: 1.4 - SDK 10.8
3rd Party Preference Panes:
          Flash Player  Support
Time Machine:
          Time Machine not configured!
Top Processes by CPU:
              53%          Safari
              17%          com.apple.hiservices-xpcservice
              14%          WindowServer
              11%          WebProcess
              11%          syncdefaultsd
Top Processes by Memory:
          74 MB          Safari
          49 MB          com.apple.dock.extra
          49 MB          mds
          49 MB          loginwindow
          49 MB          SystemUIServer
Virtual Memory Information:
          6.06 GB          Free RAM
          1.04 GB          Active RAM
          137 MB          Inactive RAM
          527 MB          Wired RAM
          152 MB          Page-ins
          0 B          Page-outs

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    If you find my post helpful please click the green star on the left under the avatar. Thanks.

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