Keynote 09 file containing video clips is Huge!

I'm a brand new user and the app looks like a real PowerPoint killer! Elegant graphics and capabilities. One key reason I bought it was to integrate looping video backgrounds on slides. I have tested this and the results have been hit and miss. For the most part it does everything I hoped it would and what PowerPoint (on Windows) absolutely CANNOT do...layer text and moving graphics on top of video. My first test file runs okay about 75% of the time. But sometimes the video clips freak out, looking like multi-colored pixel vomit! If I click around and select different slides it seems to go away. But I can't be confident in using this at a sales presentation for my company for fear it would crap out in the middle of a presentation.
That said, here's my first question: Is there a defacto-standard QuickTime format or codec that is more stable than others? I tried an MP4 QT movie as an alternative and all I got was a solid green box - no video.
Here's my second question: Why is my 3-slide file 427MB?! In Preferences I unchecked: "copy audio and movies into document." I deleted the clips, quit Keynote, restarted and re-inserted the clips and the file is still 427MB. The movies inside the file are 73MB, 103MB and 245MB...all pretty sizeable files. I'm going to try reducing the QuickTime movies using Compressor, but I wanted to ask here to see if anyone has the same issues.
Thanks.

All depends on the size and codec of your .movs. I prefer h.264 as it uses the GPU to decode (so I am told) and looks superior to me and my film buddies over other codecs. Few Macs can playback uncompressed HDVideo, you really need a dedicated card like Blackmagic cards or the like.
Does not embed videos if you have de-selected relevant option in my experience. Try making a new file, setting save options (de-select audio&video files), save file. Drag slides across from old file and save. Should be good now. If still a problem, set option to save as a package. The right-mouse-button click on file in finder an "Show contents" that way you can see exactly what files have been embedded.
To tell you something you already know: the sum of 73MB, 103MB and 245MB is 421MB
Also, I have made HD res animations that play infinitely (except for Keynote QT time limit but mine can spool across slides) and never repeat in the same way (multiple variable loops) that are 20kB-100kB in size . That's one way around the size issue but only works for animations not recorded camera video.

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    Permissions differ on "Library/Internet Plug-Ins/Flash Player.plugin/Contents/Resources/it.lproj/Localized.rsrc", should be -rw-rw-r-- , they are -rw-r--r-- .
    Permissions differ on "Library/Internet Plug-Ins/Flash Player.plugin/Contents/Resources/ja.lproj/Localized.rsrc", should be -rw-rw-r-- , they are -rw-r--r-- .
    Permissions differ on "Library/Internet Plug-Ins/Flash Player.plugin/Contents/Resources/nl.lproj/Localized.rsrc", should be -rw-rw-r-- , they are -rw-r--r-- .
    Permissions differ on "Library/Internet Plug-Ins/Flash Player.plugin/Contents/Resources/pl.lproj/Localized.rsrc", should be -rw-rw-r-- , they are -rw-r--r-- .
    Permissions differ on "Library/Internet Plug-Ins/Flash Player.plugin/Contents/Resources/pt.lproj/Localized.rsrc", should be -rw-rw-r-- , they are -rw-r--r-- .
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