KT266 PRO2 and PCI ATA controller

I have a lot of ide devices so I bought a PCI ide controller years ago. Now I got my little brothers motherboard. MSI KT266 PRO2, and plugged all my stuff into it. When it was time to reinstall Win, but it would not boot the cd, or from floppy. I checked the boot order, all looks fine.
Then I tried to take the PCI IDE controller out, and then it booted my winXP cd fine.
So basically, When the PCI ATA bios is loaded (the card), I'm unable to boot from cd-rom or floppy. Only boot from HDD1 works. So every time I need to reinstall windows, I need to unplug all harddrives from the PCI IDE controller card. Then windows is installed I can plug the harddisks back in...
I can't find an explanation to this...
No problem when the PCI IDE controller is used with 2 other motherboard I have. Latest bios is used on the motherboard and the pci IDE adapter card.
MSI KT266 PRO2
AMD athlonxp 1700+
Sapphire Radeon 9600 PRO
maxtor ata100 pci controller
768 MB DDR pc-2100 ram

On the MB controller I have 2 harddrives on primary (one master, one slave), and 1 dvd-drive (master) and 1 cd-recorder (slave) on secondary.
On my ata controller card I have 2 extra harddrives for backup. Both on the IDE1. One as master and the other as slave.
All drives are properly configured.

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