Late 2012, 13'' Retina MacBook Pro, Display bug

Hello, I am having a late 2012, 13'' Retina MacBook Pro(i7, 8Gb). Last year I upgraded to Mavericks. Immediately after upgrading I notice that my MacBook is bit slow. I always keep my OS X up-to-date. Last month I noticed something really strange.
1. Whenever I manually put my MacBook to sleep by clicking sleep command under the apple logo (top left hand corner of the screen) then the way the display turns off is not normal. I mean its not smooth as it was earlier. I have compared this with the new hardwares (MacBook Pro's) in the apple store.
2. After I put my notebook to sleep, when I try to wake it up within 5-10/15 mins, the screen flashes very quickly before entering password.
These issues are bugging me a lot. I also have apple care. I called senior adviser and described the issue. I got scared when he mentioned that there might be some issue with my logic board/graphic card.
I also performed Apple Hardware Test by myself and also booked an appointment with the Apple Genius Bar guys but everything came up normal.
Is there any particular test I need to mention to the Genius bar guys to test with there unique hardware checking tool?
Note: I did clean install of OS X couple of times, also did SMC reset & PRAM reset.
Recently I updated with latest OS X update 10.9.4 hoping that this issue will resolve but no luck.
I am wondering whether any of you guys have experienced similar issue or I am the only one. Is it something I should worry about because I still have apple care and if it requires major hardware change then I can easy get it done without paying any $$$$. I know logic boards are pretty expensive.
Thank you!

The screen glitches that have been most likely when upgrading to 10.9.3 are quick, brief flashes of yellow, pink, etc., light on screens immediately before login. It doesn't sound as if you're having that problem.
If QuickTime won't record the glitches, then it's unlikely to be a problem with your GPU - most likely a screen glitch (if that) or a OS X glitch, nothing related to Flash Player.
However, if I were you, I would take the machine into your local Apple Store and have the techs run some tests. They may want to install OS X anew, so I would make certain that you have a backup before taking your machine into the techs.
Good luck,
Clinton

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Thank you for your response! No actually, they are both the 13 inch models.
Specs wise though, do you think I will notice a difference between the two, if I am not using too heavy applications?
I will be majoring in Computer Science next year, so that's something im trying to keep in mind too.
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Late 2012, 13'' Retina MacBook Pro, Display bug

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