Leopard DU not repairing permissions

Hi there
I have a 1.8Ghz G5 (2.5Gb RAM) PowerMac here, running Leopard 10.5.8, which is used as a file server. The drives aren't RAIDed or anything. I am going to add a 2nd internal drive to it, and as a maintenance I decided to repair pemrissions before shutting it down.
However, when I ran Disk Utility, I found that I cound't repair permissions at all. I could select the drive, click the botton, and the progression bar would go to the 'striped barber pole' effect that comes up as it is preparing to do something, but then it just stays there. I can cancel it, but no repairs happen.
Any ideas how to get this to work or should I just use a 3rd party solution like Leopard Cache Cleaner? I'm not sure whether other software would just come up against the same issue.
Thanks

**UPDATE**
Emergency over. It took about 30mins, but it did in the end actually work.
Sorry to waste you time, bandwidth, and server space.

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    Permissions differ on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/jconsole.ja r", should be lrwxr-xr-x , they are lrw-r--r-- .
    Repaired "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/jconsole.ja r".
    Permissions differ on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/management- agent.jar", should be lrwxr-xr-x , they are lrw-r--r-- .
    Repaired "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/management- agent.jar".
    User differs on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib", should be 0, user is 95.
    Repaired "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib".
    Permissions differ on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/dt.jar", should be -rw-r--r-- , they are -rwxr-xr-x .
    Repaired "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/dt.jar".
    Permissions differ on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/jce.jar", should be -rw-r--r-- , they are -rwxr-xr-x .
    Repaired "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/jce.jar".
    Permissions differ on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/management -agent.jar", should be -rw-r--r-- , they are -rwxr-xr-x .
    Repaired "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/management -agent.jar".
    Permissions differ on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/security/b lacklist", should be lrwxr-xr-x , they are lrw-r--r-- .
    Repaired "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/security/b lacklist".
    User differs on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Libraries", should be 0, user is 95.
    Repaired "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Libraries".
    Permissions differ on "System/Library/Java/Support/Deploy.bundle/Contents/Resources/JavaPluginCocoa.b undle/Contents/Resources/Java/deploy.jar", should be lrwxr-xr-x , they are lrw-r--r-- .
    Repaired "System/Library/Java/Support/Deploy.bundle/Contents/Resources/JavaPluginCocoa.b undle/Contents/Resources/Java/deploy.jar".
    Permissions differ on "System/Library/Java/Support/VisualVM.bundle/Contents/Home/profiler3/lib/deploy ed/jdk15/hpux-pa_risc2.0/libprofilerinterface.sl", should be -rw-r--r-- , they are -rwxr-xr-x .
    Repaired "System/Library/Java/Support/VisualVM.bundle/Contents/Home/profiler3/lib/deploy ed/jdk15/hpux-pa_risc2.0/libprofilerinterface.sl".
    Permissions differ on "System/Library/Java/Support/VisualVM.bundle/Contents/Home/profiler3/lib/deploy ed/jdk15/hpux-pa_risc2.0w/libprofilerinterface.sl", should be -rw-r--r-- , they are -rwxr-xr-x .
    Repaired "System/Library/Java/Support/VisualVM.bundle/Contents/Home/profiler3/lib/deploy ed/jdk15/hpux-pa_risc2.0w/libprofilerinterface.sl".
    Permissions differ on "System/Library/Java/Support/VisualVM.bundle/Contents/Home/profiler3/lib/deploy ed/jdk16/hpux-pa_risc2.0/libprofilerinterface.sl", should be -rw-r--r-- , they are -rwxr-xr-x .
    Repaired "System/Library/Java/Support/VisualVM.bundle/Contents/Home/profiler3/lib/deploy ed/jdk16/hpux-pa_risc2.0/libprofilerinterface.sl".
    Permissions differ on "System/Library/Java/Support/VisualVM.bundle/Contents/Home/profiler3/lib/deploy ed/jdk16/hpux-pa_risc2.0w/libprofilerinterface.sl", should be -rw-r--r-- , they are -rwxr-xr-x .
    Repaired "System/Library/Java/Support/VisualVM.bundle/Contents/Home/profiler3/lib/deploy ed/jdk16/hpux-pa_risc2.0w/libprofilerinterface.sl".
    Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/dt.jar", should be -rw-r--r-- , they are lrwxr-xr-x .
    Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/dt.jar".
    Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jce.jar", should be -rw-r--r-- , they are lrwxr-xr-x .
    Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jce.jar".
    Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jconsole.jar ", should be -rw-r--r-- , they are lrwxr-xr-x .
    Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jconsole.jar ".
    Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/management-a gent.jar", should be -rw-r--r-- , they are lrwxr-xr-x .
    Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/management-a gent.jar".
    User differs on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib", should be 95, user is 0.
    Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib".
    Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/dt.jar", should be lrwxr-xr-x , they are -rw-r--r-- .
    Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/dt.jar".
    Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/jce.jar", should be lrwxr-xr-x , they are -rw-r--r-- .
    Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/jce.jar".
    Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/management- agent.jar", should be lrwxr-xr-x , they are -rw-r--r-- .
    Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/management- agent.jar".
    Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/security/bl acklist", should be -rw-r--r-- , they are lrwxr-xr-x .
    Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/security/bl acklist".
    User differs on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Libraries", should be 95, user is 0.
    Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Libraries".
    Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle", should be drwxr-xr-x , they are lrwxr-xr-x .
    Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle".
    Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle/Contents/Resources/Java/deploy.jar", should be -rw-r--r-- , they are lrwxr-xr-x .
    Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle/Contents/Resources/Java/deploy.jar".
    Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle/Contents/Resources/Java/libdeploy.jnilib", should be -rwxr-xr-x , they are lrwxr-xr-x .
    Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle/Contents/Resources/Java/libdeploy.jnilib".
    Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/VisualVM.bundl e/Contents/Home/profiler3/lib/deployed/jdk15/hpux-pa_risc2.0/libprofilerinterfac e.sl", should be -rwxr-xr-x , they are -rw-r--r-- .
    Repaired "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/VisualVM.bundl e/Contents/Home/profiler3/lib/deployed/jdk15/hpux-pa_risc2.0/libprofilerinterfac e.sl".
    Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/VisualVM.bundl e/Contents/Home/profiler3/lib/deployed/jdk15/hpux-pa_risc2.0w/libprofilerinterfa ce.sl", should be -rwxr-xr-x , they are -rw-r--r-- .
    Repaired "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/VisualVM.bundl e/Contents/Home/profiler3/lib/deployed/jdk15/hpux-pa_risc2.0w/libprofilerinterfa ce.sl".
    Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/VisualVM.bundl e/Contents/Home/profiler3/lib/deployed/jdk16/hpux-pa_risc2.0/libprofilerinterfac e.sl", should be -rwxr-xr-x , they are -rw-r--r-- .
    Repaired "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/VisualVM.bundl e/Contents/Home/profiler3/lib/deployed/jdk16/hpux-pa_risc2.0/libprofilerinterfac e.sl".
    Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/VisualVM.bundl e/Contents/Home/profiler3/lib/deployed/jdk16/hpux-pa_risc2.0w/libprofilerinterfa ce.sl", should be -rwxr-xr-x , they are -rw-r--r-- .
    Repaired "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/VisualVM.bundl e/Contents/Home/profiler3/lib/deployed/jdk16/hpux-pa_risc2.0w/libprofilerinterfa ce.sl".
    Permissions repair complete

    [At the risk of being redundant|http://discussions.apple.com/search.jspa?threadID=&q=repair+permissio ns&objID=&dateRange=all&userID=Barney-15e&numResults=30],
    The repair permissions database (or whatever it is) doesn't get updated regularly with the updates themselves. So, when the updates change things, the repair permissions database doesn't know about them, and flags them. They are not wrong, nor are they problems. The best way to not see those things is to not repair permissions unless you have a need to.
    When do you have a need to? When something indicates it can't continue because it can't access a file that it should or doesn't have permission to do so. And, that is only true if it is trying to access something in the system space. If it is in your home folder, repairing permissions won't fix it.
    Unless you actually have a permission problem, you don't need to repair permissions.

  • Permissions do not repair after snow leopard upgrade

    Taking advice from this forum, upgraded my 2006 imac with snow leopard. Loving it.  One concern is that every time I run repair permissions it makes a whole slew of repairs, takes 13 minutes.  However if I run it again it makes all the same repairs again.   Have done this numerous times with no change.  Any advice? Here is the most serious looking one the last one: 
    Warning: SUID file "System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/MacOS/ARDAg ent" has been modified and will not be repaired.
    Thank you for any input.

    this is normal, and you can take a look at the following link about SUID
    http://support.apple.com/kb/TS1448
    There always seems to be some list of repairs, relax and enjoy SL
    Mike

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