Lines when exporting to PDF (in print)

Hello,
I have an indesign document with several transparent layers (light grey layers).
They all show fine on screen, and print perfect here. But when sending it to the printshop I ran into some white hairlines.
When exporting to PDF X/1a I get loads (transparency flattened), when exporting to PDF X/4 I do get a slight edge (in white) where the gradient transparency ends.
I do believe this issue is at the printer end, but 'yes we use PDF' was the only input I got from them.
Again, they print just fine on my home printer, but don't with the 'pro' printing company my company uses :s
Any advice, besides exporting to tiffs on those pages?
Thanks!

I could paste the graphic with fade in photoshop and match the background.
The think is, the front cover for example has more transparency and layers and prints just fine.
Does stitching occur more on lighter objects and backgrounds?
I obviously can't trust the printer we're using to handle the flattening so we'll have to use a workaround.
Thanks

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Lines when exporting to PDF (in print)

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