Lion appstore issues - shows applications installed when they're not

Hi folks,
Lion installed (mostly) successfully.
I'm having an issue with the app store:
I needed to reboot for another driver/software installation.
I used the "pause" buttons on the App Store applications being installed.
I rebooted.
I opened up the app store to resume the downloads
One application (of the two) had the status "Installed" the other's status was "Update"
The "installed" application was not installed
The "update" application says I need to log in with the account I purchased said software but it's not installed to begin with and I am, in fact, logged in with the only account I have and have ever used.
I cleared both the app store cache (in ~/Library/Caches) and the "storeagent" cache in the same directory.
To no avail.
Any ideas?

Here's what I did, but it won't work for everyone.
I hadn't installed Lion on my existing Snow Leopard partition - I installed from scratch on a new partition.
I was able to simply copy over the apps from the other partition (but it would have also worked if they were on another Mac) and then use the App Store to update them.
That resolved my issue, but it wouldn't have if I didn't have access to another Mac or OS X installation to work with.
Cache cleaning, preference deleting worked to no avail as you noted - so I don't think we found everything, there's got to be some setting/file sitting around in a folder we just didn't find. I had fully intended to try Onyx for Lion but when I first posted this, the Titanium Software website was down.

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