Lion not saving preferences

I just switched to a new retina macbook, with os 10.7. I'm having trouble with Linotype Font Explorer X not retaining its settings - previously, you could turn a font on & it would stay on. Although sometimes it does retain some of the font settings, but not all.
I've also noticed other programs occasionally not saving preferences.
Is this a known issue with Lion?

Make sure the systemprefs plist file is not locked. If it is, unlock it. If it isn't, delete it then restart.
To find the file
1. Make Finder active. Choose 'Go' from the menu bar, hold down the option key.
2. Choose Library (you must have the 'option' key held down).
3. Go to Preferences > com.apple.systemprefereces.plist
4. Right-click (or hit 'cmd-i' on the keyboard) and choose 'Get Info'. If the 'Locked' option is ticked, untick it. Then Restart. If the 'Locked' option is not ticked, close the dialogue, remove the file to trash. Restart.
5. What happens now is that system will restart at default system prefs. However, it should now save your new settings. To test it, just set one of the setting that you know didn't 'stick before', then restart and see if all is good. 

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