Logic crashing when booting from system drive clone

Hi,
So I've been copying system drive clones to another drive for backup, but I find when booting from the (internal HD) clone, Logic 9 will consistently crash on me when trying to open various brands/types of plug-ins.
For cloning I've tried SuperDuper, which I own, and Carbon Copy Cloner, which I'm running the 30 day trial of, and had identical results.
Yeah I know it's lame to be using Logic 9, but I have several important projects originally started on 9 that I need to be finishing up now, and those projects don't play nicely with Logic X.
I'd like to update my OS and Logic X versions, but want to have a working system clone before risking it.
Suggestions?
Thanks.

Um right after posting the query I remembered what I had learned probably right here back in yesteryear, and that is there is one thing that doesn't translate in the clone.
When doing Get Info on the Logic 9 app, there is a check box for "Open in 32-bit mode". I need to have that unchecked, so I can run in 64-bit mode, but for the "clone", that box gets automatically checked, it is NOT actually a clone, hence the issue I was having with plug-ins causing crashes.
Un-checking that box on the clone solved my issue.

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    |           ---------------------------------------------------
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    |           Size (Total):       999542140928 B (999.5 GB)
    |           Size (Converted):   -none-
    |           Revertible:         Yes (no decryption required)
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