Logic is acting strange,now...

I reinstalled OSX 4.2 and I upgraded the memory, now Logic won't fully start and will not shut down. The motu firewire software is also not shuting down. I selected force quit and nothing happens. Am I going cookoo? What have I overlooked?
After each install, I repair permissions... (I don't know what's gone wrong.)

(continued...)
Thread 5:
0 libSystem.B.dylib      0x9002ca78 semaphorewait_signaltrap + 8
1 libSystem.B.dylib      0x9003125c pthreadcondwait + 508
2 com.apple.logic.pro      0x00717db4 0x1000 + 7433652
3 libSystem.B.dylib      0x9002c3b4 pthreadbody + 96
Thread 6:
0 libSystem.B.dylib      0x9002ca78 semaphorewait_signaltrap + 8
1 libSystem.B.dylib      0x9003125c pthreadcondwait + 508
2 com.apple.logic.pro      0x00717f4c 0x1000 + 7434060
3 libSystem.B.dylib      0x9002c3b4 pthreadbody + 96
Thread 7:
0 libSystem.B.dylib      0x9000a758 machmsgtrap + 8
1 libSystem.B.dylib      0x9000a69c mach_msg + 60
2 com.apple.audio.midi.CoreMIDI      0x968acac8 XServerMachPort::ReceiveMessage(int&, void*, int&) + 84
3 com.apple.audio.midi.CoreMIDI      0x9689fc80 MIDIInPortThread::Run() + 64
4 com.apple.audio.midi.CoreMIDI      0x968a3f44 XThread::RunHelper(void*) + 28
5 com.apple.audio.midi.CoreMIDI      0x968ad87c CAPThread::Entry(CAPThread*) + 96
6 libSystem.B.dylib      0x9002c3b4 pthreadbody + 96
Thread 8:
0 libSystem.B.dylib      0x9004ca18 syscallthreadswitch + 8
1 com.apple.Foundation      0x928946b0 +[NSThread sleepUntilDate:] + 152
2 com.apple.AppKit      0x93699048 -[NSUIHeartBeat _heartBeatThread:] + 1100
3 com.apple.Foundation      0x9287c2b4 forkThreadForFunction + 108
4 libSystem.B.dylib      0x9002c3b4 pthreadbody + 96
Thread 9:
0 libSystem.B.dylib      0x9002f66c kevent + 12
1 com.apple.DesktopServices      0x9278bad8 TFSNotificationTask::FSNotificationTaskProc(void*) + 56
2 ...ple.CoreServices.CarbonCore      0x90b387c8 PrivateMPEntryPoint + 76
3 libSystem.B.dylib      0x9002c3b4 pthreadbody + 96
Thread 10:
0 libSystem.B.dylib      0x9002ca78 semaphorewait_signaltrap + 8
1 libSystem.B.dylib      0x9003125c pthreadcondwait + 508
2 ...ple.CoreServices.CarbonCore      0x90b389b8 MPWaitOnQueue + 224
3 com.apple.DesktopServices      0x9278c330 TNodeSyncTask::SyncTaskProc(void*) + 108
4 ...ple.CoreServices.CarbonCore      0x90b387c8 PrivateMPEntryPoint + 76
5 libSystem.B.dylib      0x9002c3b4 pthreadbody + 96
Thread 11:
0 libSystem.B.dylib      0x9002ca78 semaphorewait_signaltrap + 8
1 libSystem.B.dylib      0x9003125c pthreadcondwait + 508
2 com.apple.logic.pro      0x0076da54 0x1000 + 7785044
3 libSystem.B.dylib      0x9002c3b4 pthreadbody + 96
Thread 12:
0 libSystem.B.dylib      0x90124408 semaphoretimedwaittrap + 8
1 com.steinberg.HALion      0x120e8a18 dyldstub_bindinghelper + 234760
2 com.steinberg.HALion      0x1223ee70 dyldstub_bindinghelper + 1636704
3 com.steinberg.HALion      0x120e86e4 dyldstub_bindinghelper + 233940
4 libSystem.B.dylib      0x9002c3b4 pthreadbody + 96
Thread 13:
0 libSystem.B.dylib      0x90124408 semaphoretimedwaittrap + 8
1 com.steinberg.HALion      0x120e8a18 dyldstub_bindinghelper + 234760
2 com.steinberg.HALion      0x1223ee70 dyldstub_bindinghelper + 1636704
3 com.steinberg.HALion      0x120e86e4 dyldstub_bindinghelper + 233940
4 libSystem.B.dylib      0x9002c3b4 pthreadbody + 96
Thread 14:
0 libSystem.B.dylib      0x90124408 semaphoretimedwaittrap + 8
1 com.steinberg.HALion      0x120e8a18 dyldstub_bindinghelper + 234760
2 com.steinberg.HALion      0x1223ee70 dyldstub_bindinghelper + 1636704
3 com.steinberg.HALion      0x120e86e4 dyldstub_bindinghelper + 233940
4 libSystem.B.dylib      0x9002c3b4 pthreadbody + 96
Thread 15:
0 libSystem.B.dylib      0x90124408 semaphoretimedwaittrap + 8
1 com.steinberg.HALion      0x120e8a18 dyldstubbin

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    1. Periodically, Safari will stop loading a page completely. So it will start and then the url bar will be partially blue and the circle will keep circling but nothing will happen. Once it does this on one tab in that window, it will start doing it on all new tabs opened up in that window, but any original tab there might still go through. If I close the window and reopen another window, all sites on all tabs will go right through. I tried disabling DNS prefetching, and that helps Safari behave for a few minutes, then it goes back to such strange behavior. I tested using my wireless and using a different network, and it happens on both, so it's not my router. Sometimes, opening a new window doesn't help. So I shut down Safari and restart. Sometimes that doesn't help either, so I end up having to reset Safari. Obviously, having to reset Safari multiple times a day is neither productive nor ideal.
    2. When it does that url thing, it also seems to become incapable of completing from history or bookmarks. So for example, if I open a tab and type a website name, it won't complete it, even though I have that bookmarked. Generally when that happens on the first tab of a window, I can pull up the site from bookmarks and it will load immediately. But the next tab I open in that window, will do the webpage not loading business I described in #1 above.
    3. A short while ago, i tried resizing a window and it did the strangest thing where it would expand the window space, but just give me a "gray area" rather than expanding the whole web page. I closed the window, opened a new one and resizing worked fine again.
    4. A short while ago, another strange happening: everytime I opened up a new tab in the window and loaded a site, it would merge that tab with my old tab and delete the first tab, so at any given time, it was just a single tab window. I closed the window and reopened, and voila normal tab behavior again.
    Strangely, if I have two windows open - as I often do - only one window will be affected by such strange behavior. The other one will function normally. But such odd behavior is not limited to instances when I have two windows open. It's also happening when there's one window open. For reasons I do not understand, it seems something in the processes of a window gets corrupted after a little while on Safari and that window starts acting strangely.
    Odd and irritating and difficult. I'd greatly appreciate your help!
    I'm using Safari 5.0.6 on OS X 10.5.8... thanks!

    I don't see anything in your post regarding the Safari cache. BTW, a "reset" does not empty the cache.
    From your Safari menu bar click Safari / Empty Cache. Restart your Mac, try Safari.
    If that didn't help, quit Safari if it's open.
    Go to ~/Library/Caches/com.apple.Safari
    Move the Cache.db (or ApplicationCache.db) file from the com.apple.Safari folder to the Trash.
    Try Safari.
    If nothing above helped, make sure there's enough free space on the startup disk.    Right or control click the MacintoshHD icon. Click Get Info. In the Get Info window you will see Capacity and Available. Make sure you have a minimum of 15% free disk space.
    If nothing above has helped, try Safari in another user account. If you see the same issues there, log back into your admin account.
    Launch Disk Utility. Select the startup disk in the panel on the left then select the First Aid tab.
    Click:   Verify Disk  (not Verify Disk Permissions)
    If the disk needs repairing follow the instructions for Using Disk Utility to verify or repair disks.

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