Lost 3/4 of my iTunes Podcasts on my MacPro Desktop machine

Hi,
Recently my 64Gb iPhone 4s crashed after upgrading to 7.1. After restoring the backup up a number of times and the phone continuing to crash, I decided to start from scratch.
I downloaded the Apple Podcasts App onto my iPhone.
This populated immediately with the Podcast headings (subscriptions) that I have resident on my Macpro Desktop (March 2008 running 10.8.5). I have almost 3Tb of Podcasts on my MacPro desktop (many video based) and I was concerned that my iPhone would start downloading many of the podcasts. I immediately deleted all the video based Podcasts (some I have been paying for over a number of years) on my iPhone. I commenced this process on the way to work (at the Train Station) from my iPhone.
When I arrived home and started up iTunes on my MacPro Desktop, the spinning beach ball came up and stayed spinning for 3 or 4 minutes. When it stopped I noticed that 3/4 of the podcasts on my iTunes MacPro desktop had disappeared. In fact, all the Podcasts that I had deleted on my iPhone seemed to have also been deleted from my MacPro iTunes account (approx 2.3 Tb had disappeared when I checked the iTunes Drive-I have a separate 3Tb iTunes HDD for my music and Podcasts). The Podcasts were completely deleted, even the heading so I was unable to re-subscribe. It was a bit of a shock and I searched my Bin (no evidence of it there; the Bin I assume is located on my OS drive (1Tb). I hadn't even connected my iPhone to my MacPro let alone tried to sync the 2.
I am at a loss to try and retrieve the missing 2.3 Tb. I don't believe it is on my iTunes drive, definitely too large for the bin. Fortunately I had done a back up, but this was a while ago.
Questions
1. What happened for this to occur? How can the Podcast App on my iPhone directly affect my iTunes Podasts on my MacPro iTunes account at home? What if I delete the App and use another Podcasting App on my iPhone?
2. I am not sure how I can move the backup iTunes Podcasts to the MacPro HDD iTunes account. How do I also move them so that the subscription is 're-activated?
3. How is my iTunes Library catalogue affected (I have Time Machine connected to the 1 Tb Mac OS Drive on my machine. When I back up the iTunes 3Tb drive, I use a separated 3Tb HDD and use SuperDuper).
Since the Podcasts disappeared, I haven't emptied my bin.
Appreciate any explanations & advice!
Thank you
Mark

Are the music files still in your PC? The default location for them will be in the iTunes Music folder arranged in folders by artist/album.
If the music files are still there, it is just your library database that is damaged and you may be able to recover as follows:
When you upgrade to iTunes 8, a backup library database is created in the iTunes\Previous iTunes Libraries folder. The name includes the date of the upgrade reversed. It will have a name like iTunes Library 2008-10-03.itl
SO try this - close iTunes and drag iTunes Library.itl and iTunes Music library.xml from the iTunes folder to your desktop.
Next copy the backup library file from Previous iTunes Libraries to the iTunes folder and rename it iTunes Library.itl - i.e. remove the date from the file name.
WHen you open iTunes it will have to go through some updating, but with any luck you should get your previous library database back.

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