Lost ALL Health Data

Question

I recently took my iPhone 6 into the Apple store for a warranty replacement. The front camera shifted significantly and there was a cluster of dead pixels on the right side of the screen. I was told that I needed a backup because of the replacement, and I informed the genius that I had made a full iTunes backup of my phone before I can into the store. At home I restored the new phone from the recent backup and everything went smoothy except all of my data within the health and activity apps was missing. This is not just a week worth of apple watch data but all of my data from workouts and heart rate readings I had been collecting since the health app was released. After several discussions with Apple support the confirmed reason as to why the data did not transfer was because the backup was not encrypted. In order for the health and activity app data to stored in a backup the backup needs to be password protected. This is a courteous heads up, I wish Apple would have done the same.

Answer 1

That information is provided in support documents regarding backups, such as this one. About backups in iCloud and iTunes - Apple Support
iTunes backups
From your Mac or PC, you can make a backup of your device in iTunes. Syncing your device with your computer isn't the same as making a backup.
An iTunes backup includes nearly all of your device's data and settings. An iTunes backup doesn't include:
Content from the iTunes and App Stores, or PDFs downloaded directly to iBooks
You can back up this content using Transfer Purchases in iTunes.
Content synced from iTunes, like imported MP3s or CDs, videos, books, and photos
Photos already stored in the cloud, like My Photo Stream, and iCloud Photo Library
Touch ID settings
Apple Pay information and settings
Health and Keychain data
To back up Health and Keychain data, you'll need to use Encrypted Backup in iTunes.
Find your iTunes backups on your Mac or PC and learn to delete backups that you don't need.
My emphasis added.